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The map label for this gene is parB [H]

Identifier: 89885898

GI number: 89885898

Start: 177490

End: 179232

Strand: Reverse

Name: parB [H]

Synonym: Rfer_4412

Alternate gene names: 89885898

Gene position: 179232-177490 (Counterclockwise)

Preceding gene: 89885899

Following gene: 89885897

Centisome position: 69.62

GC content: 56.28

Gene sequence:

>1743_bases
ATGGAAACGCCAACCATCGCGGGCATTGCCCTGCGCGACTTACACGTTCCGTCTTACAACCCTCGTCGTAAGGTTCACGA
CGATCAGGACTGGCAGGACTTTAAAGATAGTCTCAAATCCAAGGGAGTTCTCCAGGCAATTCTGGCTCGGCCAGTGCAGG
GCAAGAAAACCCCGTACGAAGTTGTCGCTGGGCAGCGACGCTTCCTGGGCTCGCTGGAGGTATTCGGTCAAGACTACCAA
ATCCCAGCGCTGATCAAGGTGATGACCGACGAGGAAGCCGAAGCGGCCTCTGCCGCGGAAAACCTGCAACGCGAACCGAT
GAGCCCAGCCGAAGAAGCCGAAGCCGCCGCTCGTGAACTAGCGCGCTGCAATGGCGATCGCGAGGAAACCGCCAAGCGCA
TGAACATGTCGCGGCTCAAACTGGACAACCGGTTGAAACTCATGGCATGTTCGCCTCTGGTGCGCCAACGTCTGATTGAG
CGACGGTTGAAACTGGGCGTGGCCGAGATGCTCTCGGGACTGACCATGGTCAAACAGGACGAGCTGGTCAGCCAGTTTGA
CAAGATCGGGATCCCCTCTATCGAGGATGTCTCGGCGATGATTCTGTCTTTGACCAAGGCACTGCCATCGGCGATCTTTG
ATCCTGTCGACTGTGGCGCCTGTGCACACAACAGCGCGCGTCAGCAAGCGATGTTCGGCAATATCGGGGAAGGGCATTGC
CTGGACGCGGTCTGCTTCGACAATAAAACAGAGGCCCAGCTTCAGTTGACGGTCGACAAACTCAAAGACGACTTTCAGCG
CGTGGAAATAGTGCGCCCCGGCGACAACTTCCGTGTGATCCGTCTTACACCAGAATCGATCGGGGAAAGTCAGGCCATTG
CCTGCCGCAGCTGCAAAGACTTTGGTGCAGCCGTCTCTGCGATGCCCAACAAGCTCGGCAAGGTCAGTGGCGGGCTGTGC
TACGGGATTGAATGCAACGAGACCAAGGTCAAGGATTTCAAGGCGGCGCAGGAAGCTCTCAATTCGCCCCCTCCCACAGC
AGAAAAGCCATCCGGGGCTGCTGCCGGCCCCGGCACGCCACCCGTTGAAGGCTCCAAAGCCGCCGGCGCAGTCAAGCCTG
CCAAGGCCGAAAAGCCCATTACCGAGGCAGCCAAGCCAACTGTGGGGCTCAGCGGCGCGGTACTCGACTTCCGTGATGTG
CTGTACCGCAAGGTAGTCTTCAAGGAACTGGCGGTGAACTCCGAGTTCAATGCACGTTTTGTGATGGCCATCGTGCTCAA
CAGCCAGGGACGCCTGTTCAAAGGCGAGGAAGTCAAGAGTGTGTTTTTGAAAAAAGGCTGGATGAAGAGCGATTTGTCAG
CCTATGGTCTGCGCGATGCGATGAAGATCATGATGGACATCCCCAAGGAACATGCACTCAACATGCTGCCCAATCTGGGG
GCGGTGGCGCTGACAGATTTGACCCGGGCTGAACTCAAGGATCTCACCATCCTTGCCAATCCCGATCTGGCAAACTACTT
CACACTCAACGATGAGTCCGGCAAGATGCTTCTTGAAAAGCTGACCAAAACCGAGATCTGCGCAATTTGCGACGAAATCG
GGATTACCGAGAAGATGGGCAAGACTTTCCGCTCAATTTCCGGTGGCAAAAAGAGCGAGTTCATCAAGCACATCACTTCG
CTCGTCGATTTTGAGTACAAAGGCAAGGTGCCCAACGTGCTCAGACCCGAGTTCGAAAAGTAA

Upstream 100 bases:

>100_bases
AAACAAAAACCGCAATCTGAGATCGGATCAGGCAACGCCTGCGTCTAACGATTGCATTCAATCAGCCGTTCGGCTGATTT
CATATCAAAGAAGGATAGTT

Downstream 100 bases:

>100_bases
AAATCCAGCTGCTGGGTACCACTTCCAGTGGTACTCTGCAAATGGCGCAGGACCCCGCATGGGGCTGCGAGAGGGCCCTC
CACTGAGGGGTCTGTCGCAG

Product: parB-like partition proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
METPTIAGIALRDLHVPSYNPRRKVHDDQDWQDFKDSLKSKGVLQAILARPVQGKKTPYEVVAGQRRFLGSLEVFGQDYQ
IPALIKVMTDEEAEAASAAENLQREPMSPAEEAEAAARELARCNGDREETAKRMNMSRLKLDNRLKLMACSPLVRQRLIE
RRLKLGVAEMLSGLTMVKQDELVSQFDKIGIPSIEDVSAMILSLTKALPSAIFDPVDCGACAHNSARQQAMFGNIGEGHC
LDAVCFDNKTEAQLQLTVDKLKDDFQRVEIVRPGDNFRVIRLTPESIGESQAIACRSCKDFGAAVSAMPNKLGKVSGGLC
YGIECNETKVKDFKAAQEALNSPPPTAEKPSGAAAGPGTPPVEGSKAAGAVKPAKAEKPITEAAKPTVGLSGAVLDFRDV
LYRKVVFKELAVNSEFNARFVMAIVLNSQGRLFKGEEVKSVFLKKGWMKSDLSAYGLRDAMKIMMDIPKEHALNMLPNLG
AVALTDLTRAELKDLTILANPDLANYFTLNDESGKMLLEKLTKTEICAICDEIGITEKMGKTFRSISGGKKSEFIKHITS
LVDFEYKGKVPNVLRPEFEK

Sequences:

>Translated_580_residues
METPTIAGIALRDLHVPSYNPRRKVHDDQDWQDFKDSLKSKGVLQAILARPVQGKKTPYEVVAGQRRFLGSLEVFGQDYQ
IPALIKVMTDEEAEAASAAENLQREPMSPAEEAEAAARELARCNGDREETAKRMNMSRLKLDNRLKLMACSPLVRQRLIE
RRLKLGVAEMLSGLTMVKQDELVSQFDKIGIPSIEDVSAMILSLTKALPSAIFDPVDCGACAHNSARQQAMFGNIGEGHC
LDAVCFDNKTEAQLQLTVDKLKDDFQRVEIVRPGDNFRVIRLTPESIGESQAIACRSCKDFGAAVSAMPNKLGKVSGGLC
YGIECNETKVKDFKAAQEALNSPPPTAEKPSGAAAGPGTPPVEGSKAAGAVKPAKAEKPITEAAKPTVGLSGAVLDFRDV
LYRKVVFKELAVNSEFNARFVMAIVLNSQGRLFKGEEVKSVFLKKGWMKSDLSAYGLRDAMKIMMDIPKEHALNMLPNLG
AVALTDLTRAELKDLTILANPDLANYFTLNDESGKMLLEKLTKTEICAICDEIGITEKMGKTFRSISGGKKSEFIKHITS
LVDFEYKGKVPNVLRPEFEK
>Mature_580_residues
METPTIAGIALRDLHVPSYNPRRKVHDDQDWQDFKDSLKSKGVLQAILARPVQGKKTPYEVVAGQRRFLGSLEVFGQDYQ
IPALIKVMTDEEAEAASAAENLQREPMSPAEEAEAAARELARCNGDREETAKRMNMSRLKLDNRLKLMACSPLVRQRLIE
RRLKLGVAEMLSGLTMVKQDELVSQFDKIGIPSIEDVSAMILSLTKALPSAIFDPVDCGACAHNSARQQAMFGNIGEGHC
LDAVCFDNKTEAQLQLTVDKLKDDFQRVEIVRPGDNFRVIRLTPESIGESQAIACRSCKDFGAAVSAMPNKLGKVSGGLC
YGIECNETKVKDFKAAQEALNSPPPTAEKPSGAAAGPGTPPVEGSKAAGAVKPAKAEKPITEAAKPTVGLSGAVLDFRDV
LYRKVVFKELAVNSEFNARFVMAIVLNSQGRLFKGEEVKSVFLKKGWMKSDLSAYGLRDAMKIMMDIPKEHALNMLPNLG
AVALTDLTRAELKDLTILANPDLANYFTLNDESGKMLLEKLTKTEICAICDEIGITEKMGKTFRSISGGKKSEFIKHITS
LVDFEYKGKVPNVLRPEFEK

Specific function: Involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR013741 [H]

Pfam domain/function: PF08535 KorB; PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 63539; Mature: 63539

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPTIAGIALRDLHVPSYNPRRKVHDDQDWQDFKDSLKSKGVLQAILARPVQGKKTPYE
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
VVAGQRRFLGSLEVFGQDYQIPALIKVMTDEEAEAASAAENLQREPMSPAEEAEAAAREL
HHHCHHHHHHHHHHCCCCCCCCHHEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ARCNGDREETAKRMNMSRLKLDNRLKLMACSPLVRQRLIERRLKLGVAEMLSGLTMVKQD
HHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCHHHHHCCHHHHHHH
ELVSQFDKIGIPSIEDVSAMILSLTKALPSAIFDPVDCGACAHNSARQQAMFGNIGEGHC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHCCCCCCCE
LDAVCFDNKTEAQLQLTVDKLKDDFQRVEIVRPGDNFRVIRLTPESIGESQAIACRSCKD
EEEEEECCCCCCEEEEEHHHHHHHHHHEEEECCCCCEEEEEECHHHCCCCHHHHHHHHHH
FGAAVSAMPNKLGKVSGGLCYGIECNETKVKDFKAAQEALNSPPPTAEKPSGAAAGPGTP
HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PVEGSKAAGAVKPAKAEKPITEAAKPTVGLSGAVLDFRDVLYRKVVFKELAVNSEFNARF
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
VMAIVLNSQGRLFKGEEVKSVFLKKGWMKSDLSAYGLRDAMKIMMDIPKEHALNMLPNLG
EEEEEECCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
AVALTDLTRAELKDLTILANPDLANYFTLNDESGKMLLEKLTKTEICAICDEIGITEKMG
HHHHHHHHHHHHHCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
KTFRSISGGKKSEFIKHITSLVDFEYKGKVPNVLRPEFEK
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METPTIAGIALRDLHVPSYNPRRKVHDDQDWQDFKDSLKSKGVLQAILARPVQGKKTPYE
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
VVAGQRRFLGSLEVFGQDYQIPALIKVMTDEEAEAASAAENLQREPMSPAEEAEAAAREL
HHHCHHHHHHHHHHCCCCCCCCHHEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ARCNGDREETAKRMNMSRLKLDNRLKLMACSPLVRQRLIERRLKLGVAEMLSGLTMVKQD
HHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCHHHHHCCHHHHHHH
ELVSQFDKIGIPSIEDVSAMILSLTKALPSAIFDPVDCGACAHNSARQQAMFGNIGEGHC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHCCCCCCCE
LDAVCFDNKTEAQLQLTVDKLKDDFQRVEIVRPGDNFRVIRLTPESIGESQAIACRSCKD
EEEEEECCCCCCEEEEEHHHHHHHHHHEEEECCCCCEEEEEECHHHCCCCHHHHHHHHHH
FGAAVSAMPNKLGKVSGGLCYGIECNETKVKDFKAAQEALNSPPPTAEKPSGAAAGPGTP
HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PVEGSKAAGAVKPAKAEKPITEAAKPTVGLSGAVLDFRDVLYRKVVFKELAVNSEFNARF
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
VMAIVLNSQGRLFKGEEVKSVFLKKGWMKSDLSAYGLRDAMKIMMDIPKEHALNMLPNLG
EEEEEECCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
AVALTDLTRAELKDLTILANPDLANYFTLNDESGKMLLEKLTKTEICAICDEIGITEKMG
HHHHHHHHHHHHHCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
KTFRSISGGKKSEFIKHITSLVDFEYKGKVPNVLRPEFEK
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]