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The map label for this gene is 89885889

Identifier: 89885889

GI number: 89885889

Start: 169220

End: 170647

Strand: Reverse

Name: 89885889

Synonym: Rfer_4403

Alternate gene names: NA

Gene position: 170647-169220 (Counterclockwise)

Preceding gene: 89885890

Following gene: 89885888

Centisome position: 66.28

GC content: 53.08

Gene sequence:

>1428_bases
ATGCATAGGCAATTGACCGTTGCGCTGTTGGTGGCGAGCAGCGCCTTCATGGCGGGCTGTGCTCAGCTTCCAGAGGCAAC
AGGAGACACCACAGGCAACGTCGGCGCATCGGGTCCTATAGCGCCCGCACCGGAAATCTCCGTCGTCGACCGCTCCCCCG
ACAGAACCAGGAACATTGGCAAAGAGGAGCTGTTCATCGCGCAGCCACTGCAGAGCAGTGATCCTATGCCACGGATCAAC
ATAGAGAACGTAACCATATTGAGCAGTCGGGTCTATGAGCTGATGCGCACCCTGCTTGATGGAAAGAATATTTCGTTTTC
AATTTCCGGCGTCAACAGCAAAGTTATGCGCCGCCATGTGTCAGCGTCCAACATCACGGGTGATCTAGAGCAGATTCTTG
ACGATTTTGCCAATTCGGTCGGGTTCTACTGGCATTACAAGGGAGGGACACTGCACATAGCGCCTGACCGCCAGTACATC
GCCACGATTCCCCCCATTGACGACGTGTACGAAAGCATGCCCCCCATGCTGCAATCCATGGGTGCGATTGACGTGTTTGT
CGATCGGACATCACACCTGGTGACCTACAGCGCCAACAGGGAGGCCTCAGAGAAGATAGATGGCTACCTCAAGCACATTC
GTGACAACAAGAAAATGATTTCTTACGATGTGTACGTCTGGCAGGTCGAACTCGATGGGGACCACAAGAACGGTATTCGG
TGGGAAAAGCTCGACGAGGAAATCGCTTCCAAAAGAGGGGTTAAACGCCAGGCCGCATCCAGTGATGCCAAATTGGGAGC
CGGCTTCAGTTCGACCTTCGGGCGCGGCGAGTTGCCGATTGATGTGCTTTCGAGTTTTCTGTCGGCCCAGGGAAAGATTC
ACGCTATTTCGCAACCGAAAATGGCAATGATCAGCGGTGGCAAAAGCACCTTTCGGATCGGCAACACCACGGTGTACGCC
AAGCAAGTCGGAACCGATTCGAGTTCGGGAGTGAACAAGACCACAGTGACTACCGCGCAGGCGTTGTCGGGAATCGAGTT
GACGGTGGTTGGCAATCTGGATGGCGAGACGGTCTATACCGACATCCAGATGAAACTCAACGACTTGCTCAGGTTCAACT
CCTTCAGCGCCAACGGTATCTCCCTGCAATTGCCCCAAAACGCAAATCGCGAACTATCGACCCTTGCGCGGATTCGTCCA
GGCAACTCTCTCTTGCTGGCGGGGATAAACATCAGCAGAACCGACGATAGCCGCACCGTAAAAGACGCTCGCGAGAAGAA
CTCGATGACCTTGCCAAATAGCATGTATGAAACCGAACAGAGAACAGAACTTGTGTTGGTTTTTTCCCCCAATGTTTACT
CCTTCATTAACGAAGGCGTGAATTCCAAGACCAATGCTGACCTTCAGGCCTATCAAAATGAAAAATGA

Upstream 100 bases:

>100_bases
GCTCGCTGGACTCATCGAGAGTCTCCTTCTCGGAAAAAAAGTGGCGTTATGCCATCAAGAATGATGAACTGGATACTTCT
ACAAACCTGGGCGGCGGTCA

Downstream 100 bases:

>100_bases
TCTCACTCGATATGCTTTGTGTGCCGTGTCATTGGCGGTGTCTCTTACGCTAGGTGGGTGTTCATCTCCTACAAGGGTCA
TCGCGGAGGATGGCGCGTCC

Product: Type II secretory pathway component PulD-like

Products: NA

Alternate protein names: OmpA/MotB Domain Protein; Type II And Iii Secretion System Protein; Pilus Biogenesis; Type II Secretory Pathway Component PulD-Like

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MHRQLTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISVVDRSPDRTRNIGKEELFIAQPLQSSDPMPRIN
IENVTILSSRVYELMRTLLDGKNISFSISGVNSKVMRRHVSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYI
ATIPPIDDVYESMPPMLQSMGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGIR
WEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQPKMAMISGGKSTFRIGNTTVYA
KQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVYTDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRP
GNSLLLAGINISRTDDSRTVKDAREKNSMTLPNSMYETEQRTELVLVFSPNVYSFINEGVNSKTNADLQAYQNEK

Sequences:

>Translated_475_residues
MHRQLTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISVVDRSPDRTRNIGKEELFIAQPLQSSDPMPRIN
IENVTILSSRVYELMRTLLDGKNISFSISGVNSKVMRRHVSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYI
ATIPPIDDVYESMPPMLQSMGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGIR
WEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQPKMAMISGGKSTFRIGNTTVYA
KQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVYTDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRP
GNSLLLAGINISRTDDSRTVKDAREKNSMTLPNSMYETEQRTELVLVFSPNVYSFINEGVNSKTNADLQAYQNEK
>Mature_475_residues
MHRQLTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISVVDRSPDRTRNIGKEELFIAQPLQSSDPMPRIN
IENVTILSSRVYELMRTLLDGKNISFSISGVNSKVMRRHVSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYI
ATIPPIDDVYESMPPMLQSMGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGIR
WEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQPKMAMISGGKSTFRIGNTTVYA
KQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVYTDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRP
GNSLLLAGINISRTDDSRTVKDAREKNSMTLPNSMYETEQRTELVLVFSPNVYSFINEGVNSKTNADLQAYQNEK

Specific function: Unknown

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52027; Mature: 52027

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRQLTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISVVDRSPDRTRNIG
CCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCC
KEELFIAQPLQSSDPMPRINIENVTILSSRVYELMRTLLDGKNISFSISGVNSKVMRRHV
CHHEEEECCCCCCCCCCEEECCCEEEHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHC
SASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYIATIPPIDDVYESMPPMLQSM
CCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCEEEECCCHHHHHHHCCHHHHHC
GAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGIR
CCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCCC
WEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQPK
HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
MAMISGGKSTFRIGNTTVYAKQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVYT
EEEEECCCCEEEECCEEEEEEECCCCCCCCCCCEEEEHHHHHCCEEEEEEECCCCCEEEE
DIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRPGNSLLLAGINISRTDDSRTV
EHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEEECEEECCCCCHHH
KDAREKNSMTLPNSMYETEQRTELVLVFSPNVYSFINEGVNSKTNADLQAYQNEK
HHHHHCCCCCCCCHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MHRQLTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISVVDRSPDRTRNIG
CCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCC
KEELFIAQPLQSSDPMPRINIENVTILSSRVYELMRTLLDGKNISFSISGVNSKVMRRHV
CHHEEEECCCCCCCCCCEEECCCEEEHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHC
SASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYIATIPPIDDVYESMPPMLQSM
CCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCEEEECCCHHHHHHHCCHHHHHC
GAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGIR
CCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCCC
WEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQPK
HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
MAMISGGKSTFRIGNTTVYAKQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVYT
EEEEECCCCEEEECCEEEEEEECCCCCCCCCCCEEEEHHHHHCCEEEEEEECCCCCEEEE
DIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRPGNSLLLAGINISRTDDSRTV
EHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEEECEEECCCCCHHH
KDAREKNSMTLPNSMYETEQRTELVLVFSPNVYSFINEGVNSKTNADLQAYQNEK
HHHHHCCCCCCCCHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA