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The map label for this gene is 89885888

Identifier: 89885888

GI number: 89885888

Start: 167251

End: 169119

Strand: Reverse

Name: 89885888

Synonym: Rfer_4402

Alternate gene names: NA

Gene position: 169119-167251 (Counterclockwise)

Preceding gene: 89885889

Following gene: 89885887

Centisome position: 65.69

GC content: 55.91

Gene sequence:

>1869_bases
ATGCATGGTGCCCTCGGCGCCGCGCCTGCGGGAACCATAGGCAACTCTGATCCCAGCAGCGTCATTGACCTAGACACTGA
ATTTGAAGACGCGTTCATCTACCGTCCGGTGCAAAGCGGGGGCGACCGCCTGCCTGACAAGATGATCAAGTCGTTGTCGT
TGACGGATACCGCGATTCTGGATGCATTGCGGCTGCTGATAAAAGACACGCCCGTTAGTTTGTCGATGATGAACGCAGCG
AACCAGAATTCAACGGTCAATGGAACAGTCACCGCTTACAACCTCAGTGGCAACCTGCCCGACGTGGTGGAAAAGCTATC
CAATTCTGCGGGTTTTTACTATCGGTACTCCCAAGGTACGCTCAATATCTACCCTGACGAACAGTTCGTGGTTTCCCTGC
CGCCCATCGTCAATGAAGATGTTTTTGCGGGTATGGCCAATACCATCGTGAAACTCGGTGCATCGGACGCATATTTGGAC
CGCCAGGGCAGGTCTCTGACGTTTCGCGCCAACCGGTCGGCCATGCGAGGGATTGACAGATTTCTCGAAAATGTGAGAGA
GACGCGCAGCCTCATCGTCTTCGATACCTATATTTACGAAGTCAATCTGACCGATGGCGCTCAAACAGGAATCAAGTGGA
ACAAACTGGCAATGGCCATCGGCCCGGGGGGCTCTCTGGGCGCTCTTGGCGCTGTCGGGGGGAGCACAGTCGCAGACTCG
GGAGGCATGGGCTTCTCGGCGATCTACAAGGGGTCGCGATTTGACCTTGACGCGTTTTTCTCATTCTTGCAGACGCAAGG
TAATGTCAAAACCATTGCCCAGCCGAAGATTGCAATCATGTCGGGATCAAAAGGCGGGTTTAAGGCAGGTTCGACCACCA
AGTACGTTTCCCAGGTCGGCACCAATTCCAGTACCACGATCAATCAAACCACAGTCAGTACCGACACCGCTGTCTCCGGG
CTGGACCTGTCTCTGACGGGCGATGTATCGGATGGCACCGTCTACGCGCGGATTCGCATCTCCCTGTCCGAACTCATCCG
CTTCAACTCATTTGAGGCACTTGGAACGTCATTGCAGCTGCCACAGACCACCTCACGCGAATTGACCACTGCGATACGTG
CACGCCCAGGCGATGTGGTGCTCCTGGGCGGCGTGAACAACAGCAGCGAGTCATCGGACTACTCGGGCTTGCCGGGTGAA
AAGGGGCAAATGCTGGTGCCAACAAGTTCAAATAAAAAAGTGGCGCGCACTGAACTGGTTATGGTCATGAAGCCAAAAAT
CGTGCGATTTTCAAATCCGCAAAGGGAAGCCGAAAAATTGGCTCGGAAGATGTTCGAGCAAAGCCAGGTCCGCGCTGTGG
CCGACGTGAAAGTGCCCGTACAGTTGGTGGAGCTCCAGGCCGTGCGGCCAGCGCCGATACGACCTGCGATCCTGCCGGCC
AATTTGATCAATCCTGTCAAAGCCAGGGTTGAACCGAATGCCCCACCGGTGGAAATAGCTGCCCAGGCCATTGCCGAACC
CGCGCCGGTCAATAAAGACAGGACTCCACCGAAAGCGAATCCATCCCAAACCAGGGTTGCCGACGTGAGTCCGGCGGTGA
GCGTGCAGACCGGCAACCTAACCGTGACTGATCCGGTCCATGGCCAACGCGAGATGGCAGTTTCCGTAGGACAGGCGGCC
CAACAACCTCAAGAGCAGGCGCAACCAGCGCCGCGTGCACGGGCTCCCATTGCCGGCGAGGCGATATCGGCCGTGCAAAC
AGCCTCGAACAAGGATGGAAGTCTGGTCGTACAGGTAAAGTCAGGCGACCATTTGGTAGCTGAAGTCAATCTCAAGCAGC
CACAGAGTGGAGAGAACAACAATGATTAA

Upstream 100 bases:

>100_bases
TCTCACTCGATATGCTTTGTGTGCCGTGTCATTGGCGGTGTCTCTTACGCTAGGTGGGTGTTCATCTCCTACAAGGGTCA
TCGCGGAGGATGGCGCGTCC

Downstream 100 bases:

>100_bases
TCGTGCCGTGCTCGCCCTAGCGCTGATGGCAGCACTTCCCGCCATGGCGGATGTCCCCAACCCCTTGATGGCGCCAACGC
CGCGCGGTACAAAAACAGGG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: MSHA Biogenesis Protein MshL; Type II And III Secretion System Protein; Msha Biogenesis Protein Mshl; Type II Secretory Pathway; Type II Protein Secretion Protein; Type II And III Secretion System Secretin; Type II Secretory Pathway Component PulD-Like Protein; Mannose-Sensitive Agglutinin; MSHA Type Biogenesis Protein MshL; OmpA/MotB Domain Protein; Type II And Iii Secretion System Protein; Pilus Biogenesis Protein Mshl; Pilus Biogenesis; Type II And III Secretion System ProteinSecretin; Type II Secretory Pathway Component PulD-Like; Mannose-Sensitive Hemagglutinin L; Type IV Pilus Mannose-Sensitive Hemagglutinin D

Number of amino acids: Translated: 622; Mature: 622

Protein sequence:

>622_residues
MHGALGAAPAGTIGNSDPSSVIDLDTEFEDAFIYRPVQSGGDRLPDKMIKSLSLTDTAILDALRLLIKDTPVSLSMMNAA
NQNSTVNGTVTAYNLSGNLPDVVEKLSNSAGFYYRYSQGTLNIYPDEQFVVSLPPIVNEDVFAGMANTIVKLGASDAYLD
RQGRSLTFRANRSAMRGIDRFLENVRETRSLIVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADS
GGMGFSAIYKGSRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTTVSTDTAVSG
LDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTTAIRARPGDVVLLGGVNNSSESSDYSGLPGE
KGQMLVPTSSNKKVARTELVMVMKPKIVRFSNPQREAEKLARKMFEQSQVRAVADVKVPVQLVELQAVRPAPIRPAILPA
NLINPVKARVEPNAPPVEIAAQAIAEPAPVNKDRTPPKANPSQTRVADVSPAVSVQTGNLTVTDPVHGQREMAVSVGQAA
QQPQEQAQPAPRARAPIAGEAISAVQTASNKDGSLVVQVKSGDHLVAEVNLKQPQSGENNND

Sequences:

>Translated_622_residues
MHGALGAAPAGTIGNSDPSSVIDLDTEFEDAFIYRPVQSGGDRLPDKMIKSLSLTDTAILDALRLLIKDTPVSLSMMNAA
NQNSTVNGTVTAYNLSGNLPDVVEKLSNSAGFYYRYSQGTLNIYPDEQFVVSLPPIVNEDVFAGMANTIVKLGASDAYLD
RQGRSLTFRANRSAMRGIDRFLENVRETRSLIVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADS
GGMGFSAIYKGSRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTTVSTDTAVSG
LDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTTAIRARPGDVVLLGGVNNSSESSDYSGLPGE
KGQMLVPTSSNKKVARTELVMVMKPKIVRFSNPQREAEKLARKMFEQSQVRAVADVKVPVQLVELQAVRPAPIRPAILPA
NLINPVKARVEPNAPPVEIAAQAIAEPAPVNKDRTPPKANPSQTRVADVSPAVSVQTGNLTVTDPVHGQREMAVSVGQAA
QQPQEQAQPAPRARAPIAGEAISAVQTASNKDGSLVVQVKSGDHLVAEVNLKQPQSGENNND
>Mature_622_residues
MHGALGAAPAGTIGNSDPSSVIDLDTEFEDAFIYRPVQSGGDRLPDKMIKSLSLTDTAILDALRLLIKDTPVSLSMMNAA
NQNSTVNGTVTAYNLSGNLPDVVEKLSNSAGFYYRYSQGTLNIYPDEQFVVSLPPIVNEDVFAGMANTIVKLGASDAYLD
RQGRSLTFRANRSAMRGIDRFLENVRETRSLIVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADS
GGMGFSAIYKGSRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTTVSTDTAVSG
LDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTTAIRARPGDVVLLGGVNNSSESSDYSGLPGE
KGQMLVPTSSNKKVARTELVMVMKPKIVRFSNPQREAEKLARKMFEQSQVRAVADVKVPVQLVELQAVRPAPIRPAILPA
NLINPVKARVEPNAPPVEIAAQAIAEPAPVNKDRTPPKANPSQTRVADVSPAVSVQTGNLTVTDPVHGQREMAVSVGQAA
QQPQEQAQPAPRARAPIAGEAISAVQTASNKDGSLVVQVKSGDHLVAEVNLKQPQSGENNND

Specific function: Unknown

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65950; Mature: 65950

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGALGAAPAGTIGNSDPSSVIDLDTEFEDAFIYRPVQSGGDRLPDKMIKSLSLTDTAIL
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECHHCCCCCCHHHHHHHCCCHHHHHH
DALRLLIKDTPVSLSMMNAANQNSTVNGTVTAYNLSGNLPDVVEKLSNSAGFYYRYSQGT
HHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCEEEEEECCE
LNIYPDEQFVVSLPPIVNEDVFAGMANTIVKLGASDAYLDRQGRSLTFRANRSAMRGIDR
EEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCCHHHHHHHH
FLENVRETRSLIVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADS
HHHHHHHHCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCCCCCC
GGMGFSAIYKGSRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVG
CCCCCHHEECCCCCCHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHC
TNSSTTINQTTVSTDTAVSGLDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQL
CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEHHHHHHHCCHHHHCCEEEC
PQTTSRELTTAIRARPGDVVLLGGVNNSSESSDYSGLPGEKGQMLVPTSSNKKVARTELV
CCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEHEEEE
MVMKPKIVRFSNPQREAEKLARKMFEQSQVRAVADVKVPVQLVELQAVRPAPIRPAILPA
EEECCCEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCCCCEECH
NLINPVKARVEPNAPPVEIAAQAIAEPAPVNKDRTPPKANPSQTRVADVSPAVSVQTGNL
HHCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCE
TVTDPVHGQREMAVSVGQAAQQPQEQAQPAPRARAPIAGEAISAVQTASNKDGSLVVQVK
EEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
SGDHLVAEVNLKQPQSGENNND
CCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MHGALGAAPAGTIGNSDPSSVIDLDTEFEDAFIYRPVQSGGDRLPDKMIKSLSLTDTAIL
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECHHCCCCCCHHHHHHHCCCHHHHHH
DALRLLIKDTPVSLSMMNAANQNSTVNGTVTAYNLSGNLPDVVEKLSNSAGFYYRYSQGT
HHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCEEEEEECCE
LNIYPDEQFVVSLPPIVNEDVFAGMANTIVKLGASDAYLDRQGRSLTFRANRSAMRGIDR
EEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCCHHHHHHHH
FLENVRETRSLIVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADS
HHHHHHHHCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCCCCCC
GGMGFSAIYKGSRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVG
CCCCCHHEECCCCCCHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHC
TNSSTTINQTTVSTDTAVSGLDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQL
CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEHHHHHHHCCHHHHCCEEEC
PQTTSRELTTAIRARPGDVVLLGGVNNSSESSDYSGLPGEKGQMLVPTSSNKKVARTELV
CCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEHEEEE
MVMKPKIVRFSNPQREAEKLARKMFEQSQVRAVADVKVPVQLVELQAVRPAPIRPAILPA
EEECCCEEECCCCHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCCCCEECH
NLINPVKARVEPNAPPVEIAAQAIAEPAPVNKDRTPPKANPSQTRVADVSPAVSVQTGNL
HHCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCE
TVTDPVHGQREMAVSVGQAAQQPQEQAQPAPRARAPIAGEAISAVQTASNKDGSLVVQVK
EEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
SGDHLVAEVNLKQPQSGENNND
CCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA