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The map label for this gene is araJ [H]

Identifier: 89256844

GI number: 89256844

Start: 1494968

End: 1496134

Strand: Reverse

Name: araJ [H]

Synonym: FTL_1567

Alternate gene names: 89256844

Gene position: 1496134-1494968 (Counterclockwise)

Preceding gene: 89256852

Following gene: 89256842

Centisome position: 78.91

GC content: 34.7

Gene sequence:

>1167_bases
ATGAAAAAAGGTTTAATTCCACTGATGTTAGGTGGTCTTGCGATAGGGATGACAGAATTTATCATGATGGGAATACTTCC
TCAGGTAGCAGGGTATTTTAATGTGAGTATTCCAGAGGCAGGACACTTGATAAGTATATATGCATTAGGAGTTGTCGTTG
GAGCACCACTATTAATATTTTTCTCATCAAGATATAGCCCTAAAAAGTTACTTATAGTGATAAGTATTATGTTGATATTA
TTTAATGGTTTATCAATATTTGCGACAAATTATGAGTTTTTAATGGTTGCAAGATTCTTATCGGGTTTGCCTCATGGTGC
ATTTTTTGGTGTTGGTTCTGTAGTTGCTATGCGTATAGCTGATCCAGGTAAAGAATCACAAGCTATAGCTTTGATGTTTG
CTGGATTAACTGTAGCTAATCTTCTGGGTATTCCTTTGACGACATCTTTAGCACTGATGGTAGGATGGCAAGTAGCATTT
GTGATAGTTGCTTTGATAGGCATTATGACAGTTGTTACAGTGTTGTTGTTTATTCCAAATCTTGAGCTAGAAAAATCTAA
ACATGCTAGTCTTACATCAGATAAGCATATATTATTAAAATCTAATAGCTGGTTAGCATTAGGAGTGGTTTCTCTAGGGT
TTGTTGGGTTATTTGCATGGTATAGCTATATATCTCCATTAATGATAAATGTAACACAGCTTTCAAATTCAACTATCCCA
TACATATTATTCTTAGCTGGGTTAGGAATGTTTTTTGGGAACCTATATGGTGGTAAATTAACTGATAGAGTTGGTGCAAT
GAATGCTACAGTTGTTACTTTAATTGGTCTTGTATTAGCGCTATTATTGATGTACTTAAGTGCTAACTTTAAATTCTTTG
CAATAGTTATAAGCTTTGGATTAGGATTCTTTGCATTTGCTCTAGTTCATGCTGTTCAAACTTTGATAATAGAAGTGTTC
AAAGGGTCTGAAATGCTAGGTTCTACGCTAAGTATCGCAGGTTTCAATATTGCTAATGCAATAGGCGCCTTTGCTGGTGG
TTTACCAATTGCTTATGGTTTCTCATACTCAAGTAGTGTGGTTGCAGGTATGATAGTTTCTATATTAGGAGTATTAATGA
TATTTATGCTGAAATATAGACTATCAGTATCTGTGCAGAGTGTTTAG

Upstream 100 bases:

>100_bases
TTATAAAAAGTCATTTAATATTTTTGTATATTATCATTGAAAAAGTTAAAAGTATAATTGGTGTCAAGCAATGAAAGTTT
AAATTTATAAGGAAAAGATT

Downstream 100 bases:

>100_bases
GATAAAGTTTAAATTTAATTGTTAAGCTTTGATTTTATTGCGATTATTTCATCAGCTTGACTAACCTTAATTTCTAAAGC
AGAAACTGGGAAAGCTAAAG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKKGLIPLMLGGLAIGMTEFIMMGILPQVAGYFNVSIPEAGHLISIYALGVVVGAPLLIFFSSRYSPKKLLIVISIMLIL
FNGLSIFATNYEFLMVARFLSGLPHGAFFGVGSVVAMRIADPGKESQAIALMFAGLTVANLLGIPLTTSLALMVGWQVAF
VIVALIGIMTVVTVLLFIPNLELEKSKHASLTSDKHILLKSNSWLALGVVSLGFVGLFAWYSYISPLMINVTQLSNSTIP
YILFLAGLGMFFGNLYGGKLTDRVGAMNATVVTLIGLVLALLLMYLSANFKFFAIVISFGLGFFAFALVHAVQTLIIEVF
KGSEMLGSTLSIAGFNIANAIGAFAGGLPIAYGFSYSSSVVAGMIVSILGVLMIFMLKYRLSVSVQSV

Sequences:

>Translated_388_residues
MKKGLIPLMLGGLAIGMTEFIMMGILPQVAGYFNVSIPEAGHLISIYALGVVVGAPLLIFFSSRYSPKKLLIVISIMLIL
FNGLSIFATNYEFLMVARFLSGLPHGAFFGVGSVVAMRIADPGKESQAIALMFAGLTVANLLGIPLTTSLALMVGWQVAF
VIVALIGIMTVVTVLLFIPNLELEKSKHASLTSDKHILLKSNSWLALGVVSLGFVGLFAWYSYISPLMINVTQLSNSTIP
YILFLAGLGMFFGNLYGGKLTDRVGAMNATVVTLIGLVLALLLMYLSANFKFFAIVISFGLGFFAFALVHAVQTLIIEVF
KGSEMLGSTLSIAGFNIANAIGAFAGGLPIAYGFSYSSSVVAGMIVSILGVLMIFMLKYRLSVSVQSV
>Mature_388_residues
MKKGLIPLMLGGLAIGMTEFIMMGILPQVAGYFNVSIPEAGHLISIYALGVVVGAPLLIFFSSRYSPKKLLIVISIMLIL
FNGLSIFATNYEFLMVARFLSGLPHGAFFGVGSVVAMRIADPGKESQAIALMFAGLTVANLLGIPLTTSLALMVGWQVAF
VIVALIGIMTVVTVLLFIPNLELEKSKHASLTSDKHILLKSNSWLALGVVSLGFVGLFAWYSYISPLMINVTQLSNSTIP
YILFLAGLGMFFGNLYGGKLTDRVGAMNATVVTLIGLVLALLLMYLSANFKFFAIVISFGLGFFAFALVHAVQTLIIEVF
KGSEMLGSTLSIAGFNIANAIGAFAGGLPIAYGFSYSSSVVAGMIVSILGVLMIFMLKYRLSVSVQSV

Specific function: May be involved in either the transport or processing of arabinose polymers [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=357, Percent_Identity=38.0952380952381, Blast_Score=240, Evalue=9e-65,
Organism=Escherichia coli, GI1787947, Length=385, Percent_Identity=36.8831168831169, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1787808, Length=219, Percent_Identity=27.3972602739726, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693198, Length=332, Percent_Identity=23.7951807228916, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41335; Mature: 41335

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGLIPLMLGGLAIGMTEFIMMGILPQVAGYFNVSIPEAGHLISIYALGVVVGAPLLIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
FSSRYSPKKLLIVISIMLILFNGLSIFATNYEFLMVARFLSGLPHGAFFGVGSVVAMRIA
HCCCCCCHHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
DPGKESQAIALMFAGLTVANLLGIPLTTSLALMVGWQVAFVIVALIGIMTVVTVLLFIPN
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LELEKSKHASLTSDKHILLKSNSWLALGVVSLGFVGLFAWYSYISPLMINVTQLSNSTIP
CCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
YILFLAGLGMFFGNLYGGKLTDRVGAMNATVVTLIGLVLALLLMYLSANFKFFAIVISFG
HHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LGFFAFALVHAVQTLIIEVFKGSEMLGSTLSIAGFNIANAIGAFAGGLPIAYGFSYSSSV
HHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHCCCHHHHHHHHHHCCCCEEECCCCHHHH
VAGMIVSILGVLMIFMLKYRLSVSVQSV
HHHHHHHHHHHHHHHHHHHHHCCEEECC
>Mature Secondary Structure
MKKGLIPLMLGGLAIGMTEFIMMGILPQVAGYFNVSIPEAGHLISIYALGVVVGAPLLIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
FSSRYSPKKLLIVISIMLILFNGLSIFATNYEFLMVARFLSGLPHGAFFGVGSVVAMRIA
HCCCCCCHHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
DPGKESQAIALMFAGLTVANLLGIPLTTSLALMVGWQVAFVIVALIGIMTVVTVLLFIPN
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LELEKSKHASLTSDKHILLKSNSWLALGVVSLGFVGLFAWYSYISPLMINVTQLSNSTIP
CCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
YILFLAGLGMFFGNLYGGKLTDRVGAMNATVVTLIGLVLALLLMYLSANFKFFAIVISFG
HHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LGFFAFALVHAVQTLIIEVFKGSEMLGSTLSIAGFNIANAIGAFAGGLPIAYGFSYSSSV
HHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHCCCHHHHHHHHHHCCCCEEECCCCHHHH
VAGMIVSILGVLMIFMLKYRLSVSVQSV
HHHHHHHHHHHHHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744033; 9278503 [H]