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The map label for this gene is ycaD [H]

Identifier: 89256813

GI number: 89256813

Start: 1458184

End: 1459422

Strand: Reverse

Name: ycaD [H]

Synonym: FTL_1528

Alternate gene names: 89256813

Gene position: 1459422-1458184 (Counterclockwise)

Preceding gene: 89256814

Following gene: 89256812

Centisome position: 76.97

GC content: 32.2

Gene sequence:

>1239_bases
ATGACCGTTAGACAGACTTTACTTATTATTATCACACCAATAATTGCGATGTGTGTATTATCATTTGGCAATGGTTTTTT
TACTACCTATTCGTCTATTGAATTAAATGATCTTGGTCGCTCTAGTTTAATGATCGGTATAATTTCAGCAGCATATTTTT
TTGGTATGACTGCAGGATCTTATTTTTCACAGTTTACTATAATCCGAGTAGGTTATATAAGAGCTTTTGTGCTATTTGCA
TCTCTTATGGCTATCAGTACTCTGATAGTTGGTGCAAATAAGAGTGTCGCTGTTTGGATATTATTTAGATTTCTCTGTGG
TTACTCATTAGCGGCTTTATTTATCATTATTGAAAGCTGGTGTATATTATCATCAGATAAGAAAAACAGAGGTTTAATTT
TTTCAATATATCTTTTTGTATATTATGGTACACAAGCATTGTCACAATTGATGATAAATGTTCACTTTAGTAATGGATTA
TTAGCATACTGTTTCATATCATCATTATGTAGTATTGCAATTGTATTAATGGCTTTTACAAAAACAGTTGCTCCTGTCCC
TCACTCCGAAGAAATTTGCTCTCCAGCTAAAATAATCAAAAAAGTTCCTTTAGCAATGGTTGCTAGTGTTATTGGTGGTT
CACTATTAGGCTCTATCTACACTTTATTACCTATATTTTTAGTAAGAGTTGGTAGTGACCATGACATGATATCTGTATTA
ATGATGACTACGATTCTTGGAGGAATGTTATTACAAGTACCTATTGGTAAATTATCAGATCTTATTGATAGACGTAAGGT
AATATTTCTAGCAGGAGCAGGTATTTTTATTACCTCAATATTTATATTTGCCTTTCATACCTCGTATTTTTTATTTGCCA
TAATTATGTTTATTTTTGGCGGTAGTGCTTTTGTGATATATCCATTATCTATATCTCATGCAAGTGATTTTCTTAATGAA
AATGAAATACTAGGAGCAATTGGGGTTTTAACAATCGCATATGGTTTGGGTTCGGTAATTAGCCCTGTGGTAATATCTGG
AGTGATGTCTGTTTTTGGACCATTTGGATTTTTTATAATTACAGCATTGCTAAGTATTAGTTTATGCTTATATTCAGCAT
ATAGAATATCAGTACGTAAATCTGCTACAGATAGAGCTACATTTACTATAGCGACTCCTGAAAGTCTTAACTTCACTGAG
GCTCAGGAAATCATCTCAGAGAAATCGTCTGAAGAATAA

Upstream 100 bases:

>100_bases
TTTCTTTGTGAAACTTTTGATATAACTAACTTAACTTAATTAAAAGCTTTCTATATAATTTGCAATATTCATTATATATC
TTTCTTTGGAGGTTAGAGCT

Downstream 100 bases:

>100_bases
TCTTCAAATAAGTATATTAAATTGCAAAGCATACATAGCTAGCTTATAATTGATAAAGTTTTTGAAAAAATTGATAAAAG
ACTTAATTTATCTAAGGAGT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGSYFSQFTIIRVGYIRAFVLFA
SLMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVHFSNGL
LAYCFISSLCSIAIVLMAFTKTVAPVPHSEEICSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHDMISVL
MMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFGGSAFVIYPLSISHASDFLNE
NEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPESLNFTE
AQEIISEKSSEE

Sequences:

>Translated_412_residues
MTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGSYFSQFTIIRVGYIRAFVLFA
SLMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVHFSNGL
LAYCFISSLCSIAIVLMAFTKTVAPVPHSEEICSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHDMISVL
MMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFGGSAFVIYPLSISHASDFLNE
NEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPESLNFTE
AQEIISEKSSEE
>Mature_411_residues
TVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGSYFSQFTIIRVGYIRAFVLFAS
LMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESWCILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVHFSNGLL
AYCFISSLCSIAIVLMAFTKTVAPVPHSEEICSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHDMISVLM
MTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFGGSAFVIYPLSISHASDFLNEN
EILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFIITALLSISLCLYSAYRISVRKSATDRATFTIATPESLNFTEA
QEIISEKSSEE

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=327, Percent_Identity=25.3822629969419, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44846; Mature: 44715

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGS
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHCCCHHHHHHHHHHHHHHHCCHHH
YFSQFTIIRVGYIRAFVLFASLMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVHFSNGLLAYCFISSLCSIAIVLMAFT
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHH
KTVAPVPHSEEICSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHDMISVL
HHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFG
HHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSAFVIYPLSISHASDFLNENEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFII
CCEEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALLSISLCLYSAYRISVRKSATDRATFTIATPESLNFTEAQEIISEKSSEE
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TVRQTLLIIITPIIAMCVLSFGNGFFTTYSSIELNDLGRSSLMIGIISAAYFFGMTAGS
CHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHCCCHHHHHHHHHHHHHHHCCHHH
YFSQFTIIRVGYIRAFVLFASLMAISTLIVGANKSVAVWILFRFLCGYSLAALFIIIESW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CILSSDKKNRGLIFSIYLFVYYGTQALSQLMINVHFSNGLLAYCFISSLCSIAIVLMAFT
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHH
KTVAPVPHSEEICSPAKIIKKVPLAMVASVIGGSLLGSIYTLLPIFLVRVGSDHDMISVL
HHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MMTTILGGMLLQVPIGKLSDLIDRRKVIFLAGAGIFITSIFIFAFHTSYFLFAIIMFIFG
HHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSAFVIYPLSISHASDFLNENEILGAIGVLTIAYGLGSVISPVVISGVMSVFGPFGFFII
CCEEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALLSISLCLYSAYRISVRKSATDRATFTIATPESLNFTEAQEIISEKSSEE
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA