Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
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Accession | NC_007880 |
Length | 1,895,994 |
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The map label for this gene is chiA1 [H]
Identifier: 89256806
GI number: 89256806
Start: 1449357
End: 1451651
Strand: Reverse
Name: chiA1 [H]
Synonym: FTL_1521
Alternate gene names: 89256806
Gene position: 1451651-1449357 (Counterclockwise)
Preceding gene: 89256810
Following gene: 89256805
Centisome position: 76.56
GC content: 36.38
Gene sequence:
>2295_bases ATGAACAAAACAAAATTAGTCTCAGTAGTATGTGCATTGATGGGTTTGGGATCATATTCACTGCTAGAAGCAGCGCCTGT AAATGATGTTAAAACATATGACTTCAAAGCACCATTTAAGGATTATAATAACAAAATAGTCCTAAGTATCAACAATGTAC CATCAGCAAAAGTAGTTGAATTTACAAGTAACTTTAAACCAAAAACTGGTTGGGGTAGTTGTTTTGGTACTCGAGCAGAT CTTGTTAATTTTGAAACAACACAACTAAGTAATGGAGAATACCTAACAAAATTATCGCTTAAAGATAGTGAAGGTTCGTT AGATCTAACTCAAACATGTGACATTATGGGTACTGACTCTGGTAATGCACTAGTATTGCCAGGTGTGGTTGTTCCTATCG TTAGTAGTGTAAAAGTTGATGGCAAAGATTTAGAAATTGAAAGACCGTGTGCAGATAATGTTTGTGAGAATCCAACTCCA GGATACACTAATGCTGCATACTATGCTCAATGGGCAGTTTGGGGACGTAAATATAATCCATATGACTTCAAATATGATAA GTTAAATACTATAATCTATGCATTTATAGGTTTTGATAAAAATACTGGCAATATAAAAACACTAGATGCTTCAGCTGACT CATGGGGATTATCAGCATCAGCAAGAGCAGCTAAAAAATATCCTTATCTAAAATCATTCTTATCATTTGGTGGTTGGACT AATAATGGTGTGACAACAGCACCAATGTTTGAGCAGTTAGCTTCAAATCAGCAAAGTATGGAAAACTTTGCTAAGCAGTC AGTTGAGCTGATGCGTAAGCTTGGCTTTAATGGTATTGATATTGACTGGGAGTGGTGGTCAGATTATGGTGATGATGTTG CTCCAGCTAAAAAGATGTTGGCTTTCTTTAAGGTTTTACGTGCTGAGTTAGACAAAGCTAGTAAAGCAGATGGTAAAAAA TATTACCTTGCAATAGCTGTAAATGGTGCGAGAAGTCGTATTGAAGCAATGGAAAACCCTAATAATCCAAATAGTGTTGC AGATTTCTGGAAGCAAACTGGCAAGCTTATGGATGAAATTAATATTATGAACTACGACTATCAAGGTGGTTGGGGTACTG GTGCACCAGCTTGGTTCCAAGCATCAGCAGCATTCCCGAATATCAACTTCTCTCCAGAGGTTGCTAATTCAATTGGTAAA ACAGGTGGTTGGTCAGTACAAGGCTCGGTAGATGCTTATATCAAAGCGGGTGTTCCTGCTAAGAAACTAATTGTTGGTTT ACCACTATACGCTAGATCAATGACTGTGGCTAGTGATACTGATGGAGGTTTGTTACAGACTATTACAGCACCTGGATTTG GTGACTATGAAGCAGGGGTATTTGATTATAAATGTTTGATTAATCCTGTAAATGATCCTGTAAATGGTTGCGGTACTGCA AAACCTATCAGCGGTTTATCAGATCTAGTTTATTATGATATCAGTTCAAATGTTGATATCTTTAACAAGTACGGTAAAGT AGCAATGCAACCATGGGCATATAGTCCATCAACGAAGACTTTTGTAACTTTTGATGATGTATGGTCTGTAAATGAAAAAA CTAAGTATGCTAAGAGTAAAAATCTTGGTGGTACTATGTTCTGGCAAGCAGATGGTGACTCAACAGATACTAACAAATCA CTAATTAATGCTGTAGCTAAAGTTTATGCTTCTGATACAATTAATGTATCTGTTAGCGATGTTACTGAGAATTCTGCTAG TATATCTTGGAATAAGCCGGAGTTAGATGGTTCTATCAAGTATAGAGTATTACTGAATGGTGAAACTATAGCAGAAAATA TTACTAGCCAAAGTTATGTACTTACAAACTTAGATAAAGGTACTAGATACACTATAGAAGTGATTGCAAGTACATCAAAT GCTTCTAGAGAAGATAGCATAACTTTTGAGACAATTGGTGCAGATGATCAAAACAATGATCAAAATAATGATCAAAATAA TGATCAAAATAATAATGCTGGATCAACTGGTAACTGGAATGCAGAAGCAGTCTACAATAAGGGTGATAAAGTTATTGTTA ATGGTGTGACTTATGAAGCTCAATGGTGGACACAAGGTAATAATCCGGCTGATGGTGGCGCATGGAAGAAACCTTTTGTT TCAGGTGAGGCATGGAGTCAAGGTCAAGCATATACTGGCGGTCAAGTAGTTACATACCAAGGCGCTAAATATAAAGCTAA ATGGTGGACTCAAGGAGATATTCCTTCAAATAGTAATGTTTGGGAAAAACAATAA
Upstream 100 bases:
>100_bases TGACATTTTTCTTTTGCTTTAGCTTTAATTATGCTCATATAATCAAAATGTAAGCATTGTGCTTACATTTATTAATAGTT GTAATAAGGAGAAATACTTT
Downstream 100 bases:
>100_bases TAAAGTCTTATATAATCTAATTCTACTAAAATTTATCACTTCTTAAAAATCTTCTTTATAAGCGCATAATTTATGAAGAT ACTTTATATATTTATCAAAT
Product: chitinase family 18 protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MNKTKLVSVVCALMGLGSYSLLEAAPVNDVKTYDFKAPFKDYNNKIVLSINNVPSAKVVEFTSNFKPKTGWGSCFGTRAD LVNFETTQLSNGEYLTKLSLKDSEGSLDLTQTCDIMGTDSGNALVLPGVVVPIVSSVKVDGKDLEIERPCADNVCENPTP GYTNAAYYAQWAVWGRKYNPYDFKYDKLNTIIYAFIGFDKNTGNIKTLDASADSWGLSASARAAKKYPYLKSFLSFGGWT NNGVTTAPMFEQLASNQQSMENFAKQSVELMRKLGFNGIDIDWEWWSDYGDDVAPAKKMLAFFKVLRAELDKASKADGKK YYLAIAVNGARSRIEAMENPNNPNSVADFWKQTGKLMDEINIMNYDYQGGWGTGAPAWFQASAAFPNINFSPEVANSIGK TGGWSVQGSVDAYIKAGVPAKKLIVGLPLYARSMTVASDTDGGLLQTITAPGFGDYEAGVFDYKCLINPVNDPVNGCGTA KPISGLSDLVYYDISSNVDIFNKYGKVAMQPWAYSPSTKTFVTFDDVWSVNEKTKYAKSKNLGGTMFWQADGDSTDTNKS LINAVAKVYASDTINVSVSDVTENSASISWNKPELDGSIKYRVLLNGETIAENITSQSYVLTNLDKGTRYTIEVIASTSN ASREDSITFETIGADDQNNDQNNDQNNDQNNNAGSTGNWNAEAVYNKGDKVIVNGVTYEAQWWTQGNNPADGGAWKKPFV SGEAWSQGQAYTGGQVVTYQGAKYKAKWWTQGDIPSNSNVWEKQ
Sequences:
>Translated_764_residues MNKTKLVSVVCALMGLGSYSLLEAAPVNDVKTYDFKAPFKDYNNKIVLSINNVPSAKVVEFTSNFKPKTGWGSCFGTRAD LVNFETTQLSNGEYLTKLSLKDSEGSLDLTQTCDIMGTDSGNALVLPGVVVPIVSSVKVDGKDLEIERPCADNVCENPTP GYTNAAYYAQWAVWGRKYNPYDFKYDKLNTIIYAFIGFDKNTGNIKTLDASADSWGLSASARAAKKYPYLKSFLSFGGWT NNGVTTAPMFEQLASNQQSMENFAKQSVELMRKLGFNGIDIDWEWWSDYGDDVAPAKKMLAFFKVLRAELDKASKADGKK YYLAIAVNGARSRIEAMENPNNPNSVADFWKQTGKLMDEINIMNYDYQGGWGTGAPAWFQASAAFPNINFSPEVANSIGK TGGWSVQGSVDAYIKAGVPAKKLIVGLPLYARSMTVASDTDGGLLQTITAPGFGDYEAGVFDYKCLINPVNDPVNGCGTA KPISGLSDLVYYDISSNVDIFNKYGKVAMQPWAYSPSTKTFVTFDDVWSVNEKTKYAKSKNLGGTMFWQADGDSTDTNKS LINAVAKVYASDTINVSVSDVTENSASISWNKPELDGSIKYRVLLNGETIAENITSQSYVLTNLDKGTRYTIEVIASTSN ASREDSITFETIGADDQNNDQNNDQNNDQNNNAGSTGNWNAEAVYNKGDKVIVNGVTYEAQWWTQGNNPADGGAWKKPFV SGEAWSQGQAYTGGQVVTYQGAKYKAKWWTQGDIPSNSNVWEKQ >Mature_764_residues MNKTKLVSVVCALMGLGSYSLLEAAPVNDVKTYDFKAPFKDYNNKIVLSINNVPSAKVVEFTSNFKPKTGWGSCFGTRAD LVNFETTQLSNGEYLTKLSLKDSEGSLDLTQTCDIMGTDSGNALVLPGVVVPIVSSVKVDGKDLEIERPCADNVCENPTP GYTNAAYYAQWAVWGRKYNPYDFKYDKLNTIIYAFIGFDKNTGNIKTLDASADSWGLSASARAAKKYPYLKSFLSFGGWT NNGVTTAPMFEQLASNQQSMENFAKQSVELMRKLGFNGIDIDWEWWSDYGDDVAPAKKMLAFFKVLRAELDKASKADGKK YYLAIAVNGARSRIEAMENPNNPNSVADFWKQTGKLMDEINIMNYDYQGGWGTGAPAWFQASAAFPNINFSPEVANSIGK TGGWSVQGSVDAYIKAGVPAKKLIVGLPLYARSMTVASDTDGGLLQTITAPGFGDYEAGVFDYKCLINPVNDPVNGCGTA KPISGLSDLVYYDISSNVDIFNKYGKVAMQPWAYSPSTKTFVTFDDVWSVNEKTKYAKSKNLGGTMFWQADGDSTDTNKS LINAVAKVYASDTINVSVSDVTENSASISWNKPELDGSIKYRVLLNGETIAENITSQSYVLTNLDKGTRYTIEVIASTSN ASREDSITFETIGADDQNNDQNNDQNNDQNNNAGSTGNWNAEAVYNKGDKVIVNGVTYEAQWWTQGNNPADGGAWKKPFV SGEAWSQGQAYTGGQVVTYQGAKYKAKWWTQGDIPSNSNVWEKQ
Specific function: Bifunctional Enzyme With Lysozyme/Chitinase Activity. [C]
COG id: COG3325
COG function: function code G; Chitinase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 fibronectin type-III domains [H]
Homologues:
Organism=Homo sapiens, GI4502809, Length=398, Percent_Identity=24.3718592964824, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI144226251, Length=360, Percent_Identity=25.2777777777778, Blast_Score=95, Evalue=3e-19, Organism=Homo sapiens, GI133893286, Length=401, Percent_Identity=23.9401496259352, Blast_Score=89, Evalue=2e-17, Organism=Homo sapiens, GI42542398, Length=307, Percent_Identity=22.8013029315961, Blast_Score=74, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17551250, Length=433, Percent_Identity=26.0969976905312, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71995504, Length=407, Percent_Identity=25.3071253071253, Blast_Score=89, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17559362, Length=428, Percent_Identity=22.4299065420561, Blast_Score=79, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320579, Length=443, Percent_Identity=21.8961625282167, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI116007452, Length=420, Percent_Identity=25.2380952380952, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI21358195, Length=446, Percent_Identity=23.3183856502242, Blast_Score=106, Evalue=7e-23, Organism=Drosophila melanogaster, GI24655584, Length=402, Percent_Identity=25.8706467661692, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI221330815, Length=386, Percent_Identity=26.4248704663212, Blast_Score=100, Evalue=7e-21, Organism=Drosophila melanogaster, GI161077700, Length=402, Percent_Identity=26.1194029850746, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI45550474, Length=403, Percent_Identity=26.5508684863524, Blast_Score=99, Evalue=9e-21, Organism=Drosophila melanogaster, GI221329807, Length=465, Percent_Identity=25.3763440860215, Blast_Score=97, Evalue=6e-20, Organism=Drosophila melanogaster, GI28573679, Length=392, Percent_Identity=25.765306122449, Blast_Score=80, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR011583 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 83595; Mature: 83595
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS50853 FN3 ; PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTKLVSVVCALMGLGSYSLLEAAPVNDVKTYDFKAPFKDYNNKIVLSINNVPSAKVVE CCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEECCCCHHCCCCEEEEEECCCCCCEEEE FTSNFKPKTGWGSCFGTRADLVNFETTQLSNGEYLTKLSLKDSEGSLDLTQTCDIMGTDS ECCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEEEEECCCCCEEHEEECEEEECCC GNALVLPGVVVPIVSSVKVDGKDLEIERPCADNVCENPTPGYTNAAYYAQWAVWGRKYNP CCEEEECCHHHHHHHHEEECCCCEEEECCCCCHHCCCCCCCCCCCHHEEEEEEECCCCCC YDFKYDKLNTIIYAFIGFDKNTGNIKTLDASADSWGLSASARAAKKYPYLKSFLSFGGWT CCCCHHHHCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC NNGVTTAPMFEQLASNQQSMENFAKQSVELMRKLGFNGIDIDWEWWSDYGDDVAPAKKML CCCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHH AFFKVLRAELDKASKADGKKYYLAIAVNGARSRIEAMENPNNPNSVADFWKQTGKLMDEI HHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH NIMNYDYQGGWGTGAPAWFQASAAFPNINFSPEVANSIGKTGGWSVQGSVDAYIKAGVPA EEEEEECCCCCCCCCCHHEEECCCCCCCCCCHHHHHHCCCCCCEEEECCCEEEEECCCCH KKLIVGLPLYARSMTVASDTDGGLLQTITAPGFGDYEAGVFDYKCLINPVNDPVNGCGTA HHHEEECCHHHCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCC KPISGLSDLVYYDISSNVDIFNKYGKVAMQPWAYSPSTKTFVTFDDVWSVNEKTKYAKSK CCCCCCCEEEEEECCCCCHHHHHCCCEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHCC NLGGTMFWQADGDSTDTNKSLINAVAKVYASDTINVSVSDVTENSASISWNKPELDGSIK CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCEE YRVLLNGETIAENITSQSYVLTNLDKGTRYTIEVIASTSNASREDSITFETIGADDQNND EEEEECCCHHHHHCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCC QNNDQNNDQNNNAGSTGNWNAEAVYNKGDKVIVNGVTYEAQWWTQGNNPADGGAWKKPFV CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCC SGEAWSQGQAYTGGQVVTYQGAKYKAKWWTQGDIPSNSNVWEKQ CCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MNKTKLVSVVCALMGLGSYSLLEAAPVNDVKTYDFKAPFKDYNNKIVLSINNVPSAKVVE CCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEECCCCHHCCCCEEEEEECCCCCCEEEE FTSNFKPKTGWGSCFGTRADLVNFETTQLSNGEYLTKLSLKDSEGSLDLTQTCDIMGTDS ECCCCCCCCCCCCCCCCCHHEEEEEEEEECCCCEEEEEEEECCCCCEEHEEECEEEECCC GNALVLPGVVVPIVSSVKVDGKDLEIERPCADNVCENPTPGYTNAAYYAQWAVWGRKYNP CCEEEECCHHHHHHHHEEECCCCEEEECCCCCHHCCCCCCCCCCCHHEEEEEEECCCCCC YDFKYDKLNTIIYAFIGFDKNTGNIKTLDASADSWGLSASARAAKKYPYLKSFLSFGGWT CCCCHHHHCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC NNGVTTAPMFEQLASNQQSMENFAKQSVELMRKLGFNGIDIDWEWWSDYGDDVAPAKKML CCCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHH AFFKVLRAELDKASKADGKKYYLAIAVNGARSRIEAMENPNNPNSVADFWKQTGKLMDEI HHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH NIMNYDYQGGWGTGAPAWFQASAAFPNINFSPEVANSIGKTGGWSVQGSVDAYIKAGVPA EEEEEECCCCCCCCCCHHEEECCCCCCCCCCHHHHHHCCCCCCEEEECCCEEEEECCCCH KKLIVGLPLYARSMTVASDTDGGLLQTITAPGFGDYEAGVFDYKCLINPVNDPVNGCGTA HHHEEECCHHHCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCC KPISGLSDLVYYDISSNVDIFNKYGKVAMQPWAYSPSTKTFVTFDDVWSVNEKTKYAKSK CCCCCCCEEEEEECCCCCHHHHHCCCEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHCC NLGGTMFWQADGDSTDTNKSLINAVAKVYASDTINVSVSDVTENSASISWNKPELDGSIK CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCEE YRVLLNGETIAENITSQSYVLTNLDKGTRYTIEVIASTSNASREDSITFETIGADDQNND EEEEECCCHHHHHCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCC QNNDQNNDQNNNAGSTGNWNAEAVYNKGDKVIVNGVTYEAQWWTQGNNPADGGAWKKPFV CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCC SGEAWSQGQAYTGGQVVTYQGAKYKAKWWTQGDIPSNSNVWEKQ CCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2203782; 8103047 [H]