Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
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Accession | NC_007880 |
Length | 1,895,994 |
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The map label for this gene is 89256718
Identifier: 89256718
GI number: 89256718
Start: 1355197
End: 1355958
Strand: Reverse
Name: 89256718
Synonym: FTL_1425
Alternate gene names: NA
Gene position: 1355958-1355197 (Counterclockwise)
Preceding gene: 89256719
Following gene: 89256717
Centisome position: 71.52
GC content: 23.1
Gene sequence:
>762_bases TTGTCTTTAATTCGTAAAATAAAATTATCTCTTCGTAATATTATTCATACAATATTAGAAAATAAAAGAAATAAGTTTTT GAAACGTAACGGCTTAGAAGTTTTAAAGTACACCACCAATCTTTTGCGTGATGAAAATATAAAGCATTGGATCGATGGAG GAACTCTTTTGGGTATAATTAGAGATAAGGATTTCATTGTTAGAGATACAGATATTGATATTGGTATTTTAATTGATAGA CCAGACTTTTTGTATGAGGTATTAGAAAAAAATAATTATCATATTGTTTATTATTATGTCGATCAAAATAATAAGAAATT TTTAATTAGAGCAGAAATATATAATGTAGGTATTGATTTTGAAATATTTTTTGAAACAAAAGAATTTTATTATTATGATT CACCAAGACAGCTTACAAAGTTAGCTAGTCGTAAAAAAGATAATCAGTACTCAAGATTAAGGTTTAAGTTTGATAAAAGT TGTATAAATAATCTATCGTATTATCAGTTTAATGATATTAACCTACCTATACCATCTGATTTAGAGAAATATTTTAGTGT TTATTATAAATCATGGAATATACCAGTAAATAAGAAGAAGTATTTAAAAGGATATTTTCACGTAGATATTAGTAATTATA AACATCATAATAATACTGTTATATATATCAAAGATGATTTTTGTTATTTTATCAAAGTTGCACCTAGTTTAATTAATTTG AAAATTTTAGAATTGCTTAGGTATTTTATAAATAGGAAATAA
Upstream 100 bases:
>100_bases AATTGGTTTTAATAGTATTGAAAAAATTGATATTTATCCAAAAGAGTATAATCGATGGTCAAATACTCATTTTTATGCTT TAGTATGTAAGAGGTGAAAT
Downstream 100 bases:
>100_bases AATCTTTAATGAAATATTGTGAGCTTATAACTTTAGTTATTCCTATATATAATATAGAAAACTATTTAGGTAGATGTTTA GATTCAGTTATTAATCAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MSLIRKIKLSLRNIIHTILENKRNKFLKRNGLEVLKYTTNLLRDENIKHWIDGGTLLGIIRDKDFIVRDTDIDIGILIDR PDFLYEVLEKNNYHIVYYYVDQNNKKFLIRAEIYNVGIDFEIFFETKEFYYYDSPRQLTKLASRKKDNQYSRLRFKFDKS CINNLSYYQFNDINLPIPSDLEKYFSVYYKSWNIPVNKKKYLKGYFHVDISNYKHHNNTVIYIKDDFCYFIKVAPSLINL KILELLRYFINRK
Sequences:
>Translated_253_residues MSLIRKIKLSLRNIIHTILENKRNKFLKRNGLEVLKYTTNLLRDENIKHWIDGGTLLGIIRDKDFIVRDTDIDIGILIDR PDFLYEVLEKNNYHIVYYYVDQNNKKFLIRAEIYNVGIDFEIFFETKEFYYYDSPRQLTKLASRKKDNQYSRLRFKFDKS CINNLSYYQFNDINLPIPSDLEKYFSVYYKSWNIPVNKKKYLKGYFHVDISNYKHHNNTVIYIKDDFCYFIKVAPSLINL KILELLRYFINRK >Mature_252_residues SLIRKIKLSLRNIIHTILENKRNKFLKRNGLEVLKYTTNLLRDENIKHWIDGGTLLGIIRDKDFIVRDTDIDIGILIDRP DFLYEVLEKNNYHIVYYYVDQNNKKFLIRAEIYNVGIDFEIFFETKEFYYYDSPRQLTKLASRKKDNQYSRLRFKFDKSC INNLSYYQFNDINLPIPSDLEKYFSVYYKSWNIPVNKKKYLKGYFHVDISNYKHHNNTVIYIKDDFCYFIKVAPSLINLK ILELLRYFINRK
Specific function: Unknown
COG id: COG3475
COG function: function code M; LPS biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30761; Mature: 30630
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIRKIKLSLRNIIHTILENKRNKFLKRNGLEVLKYTTNLLRDENIKHWIDGGTLLGII CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCEEEEEE RDKDFIVRDTDIDIGILIDRPDFLYEVLEKNNYHIVYYYVDQNNKKFLIRAEIYNVGIDF ECCCEEEEECCCEEEEEECCHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEEEECCCE EIFFETKEFYYYDSPRQLTKLASRKKDNQYSRLRFKFDKSCINNLSYYQFNDINLPIPSD EEEEEEEEEEEECCHHHHHHHHHHCCCCCHHHEEEEECHHHHCCCCEEEECCCCCCCCHH LEKYFSVYYKSWNIPVNKKKYLKGYFHVDISNYKHHNNTVIYIKDDFCYFIKVAPSLINL HHHHHHHHHHCCCCCCCHHHHEEEEEEEEECCCEECCCEEEEEECCEEEEEEECCHHHHH KILELLRYFINRK HHHHHHHHHHCCC >Mature Secondary Structure SLIRKIKLSLRNIIHTILENKRNKFLKRNGLEVLKYTTNLLRDENIKHWIDGGTLLGII CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCEEEEEE RDKDFIVRDTDIDIGILIDRPDFLYEVLEKNNYHIVYYYVDQNNKKFLIRAEIYNVGIDF ECCCEEEEECCCEEEEEECCHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEEEECCCE EIFFETKEFYYYDSPRQLTKLASRKKDNQYSRLRFKFDKSCINNLSYYQFNDINLPIPSD EEEEEEEEEEEECCHHHHHHHHHHCCCCCHHHEEEEECHHHHCCCCEEEECCCCCCCCHH LEKYFSVYYKSWNIPVNKKKYLKGYFHVDISNYKHHNNTVIYIKDDFCYFIKVAPSLINL HHHHHHHHHHCCCCCCCHHHHEEEEEEEEECCCEECCCEEEEEECCEEEEEEECCHHHHH KILELLRYFINRK HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA