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The map label for this gene is rpoX [H]

Identifier: 89256500

GI number: 89256500

Start: 1130527

End: 1130823

Strand: Direct

Name: rpoX [H]

Synonym: FTL_1179

Alternate gene names: 89256500

Gene position: 1130527-1130823 (Clockwise)

Preceding gene: 89256497

Following gene: 89256501

Centisome position: 59.63

GC content: 32.66

Gene sequence:

>297_bases
ATGAATATTCAAATTACTGGTAGACATGTGGAAGTTACTGATTCAATTAAAAACTATGTTAATGAAAAAGTAGGTAAGGT
TGGGCACTATTTTGATAATATCACTTCGACTAAAGTTATATTAGATGTTGAGAAAGATCATCAAGTAGCAGAGGCTATAG
TTACAGTTCCTGGTAGTGAATTTGTTGCAAAGGCTGAAGACAAAGATTTATATGCAGCTATAGATATGCTTGAAGATAAG
TTAGCACGTCAGTTAAAAAAGCACAAAGATAAAATGAGATGTAATCACGGCGAATAG

Upstream 100 bases:

>100_bases
TTAGCTTGTATAATATGAATACAAGTATATCACTTAGGTGATTATTAAAATAGAGCTCTATAAAAATCTATAGGCTCGGT
ATTCAAATCCGGAGGTTTAT

Downstream 100 bases:

>100_bases
TAGTCTATCTTATTCAAATCTATTCAATTTTTACCTATGAATTTAAAAGCTCTAATTGATAAAAAAAATATTATCTTAAA
TTTGAATATTGAGTCTAAAA

Product: sigma-54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MNIQITGRHVEVTDSIKNYVNEKVGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSEFVAKAEDKDLYAAIDMLEDK
LARQLKKHKDKMRCNHGE

Sequences:

>Translated_98_residues
MNIQITGRHVEVTDSIKNYVNEKVGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSEFVAKAEDKDLYAAIDMLEDK
LARQLKKHKDKMRCNHGE
>Mature_98_residues
MNIQITGRHVEVTDSIKNYVNEKVGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSEFVAKAEDKDLYAAIDMLEDK
LARQLKKHKDKMRCNHGE

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=93, Percent_Identity=48.3870967741936, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1788949, Length=95, Percent_Identity=32.6315789473684, Blast_Score=58, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11110; Mature: 11110

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQITGRHVEVTDSIKNYVNEKVGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE
CCEEECCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCH
FVAKAEDKDLYAAIDMLEDKLARQLKKHKDKMRCNHGE
HEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIQITGRHVEVTDSIKNYVNEKVGKVGHYFDNITSTKVILDVEKDHQVAEAIVTVPGSE
CCEEECCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCH
FVAKAEDKDLYAAIDMLEDKLARQLKKHKDKMRCNHGE
HEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2602128; 12534463 [H]