Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
---|---|
Accession | NC_007880 |
Length | 1,895,994 |
Click here to switch to the map view.
The map label for this gene is 89256492
Identifier: 89256492
GI number: 89256492
Start: 1112824
End: 1113201
Strand: Reverse
Name: 89256492
Synonym: FTL_1170
Alternate gene names: NA
Gene position: 1113201-1112824 (Counterclockwise)
Preceding gene: 89256493
Following gene: 89256491
Centisome position: 58.71
GC content: 23.81
Gene sequence:
>378_bases ATGTACAATAAATTATTGAAAAATCTTTGTTTAGTATTATCCACAATCATAGGGCTTAGCAGTTGTATTAGTGATGGTTT GTATATCAACAACAATATTCCTAAGACAAAAATAGTTCTAGAATCTAAACCTGATAAAAATATTTTCTACTCAGATAACT ATCAATCTATTTCTCAAAGAATATATGATGATAATGTAAAAGTATTAAATCTTAAAACAGGAAAGAATGAATTTCCATTA GATAAAGATATCAAGGATTATGCCTTGTATTTTATACTTCCTGAAAATAAAAAAACTGAAAACTGGAAATACATAATAAG TTCAGATTCTGTAAATAAATTTACTATAAAAAATGATAGTAGCATAGAAAAAGATTAA
Upstream 100 bases:
>100_bases ACCTGGATAATCAAGCACAAAGGTAAAAAATATCCTTTAAGCTTCAAAATAGAATCAAAATTCTTACAAGTATTAGGATG GCAAAAACAAGGAGAAGTCA
Downstream 100 bases:
>100_bases GGGGATATTCTTATGTCAAAAGCAGACCATATTTTCAACTTAGAAGAGCAAGGCTTGCTCATAGATATCAAAGATGATTC AAAAGGCTGCACTACGAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 125; Mature: 125
Protein sequence:
>125_residues MYNKLLKNLCLVLSTIIGLSSCISDGLYINNNIPKTKIVLESKPDKNIFYSDNYQSISQRIYDDNVKVLNLKTGKNEFPL DKDIKDYALYFILPENKKTENWKYIISSDSVNKFTIKNDSSIEKD
Sequences:
>Translated_125_residues MYNKLLKNLCLVLSTIIGLSSCISDGLYINNNIPKTKIVLESKPDKNIFYSDNYQSISQRIYDDNVKVLNLKTGKNEFPL DKDIKDYALYFILPENKKTENWKYIISSDSVNKFTIKNDSSIEKD >Mature_125_residues MYNKLLKNLCLVLSTIIGLSSCISDGLYINNNIPKTKIVLESKPDKNIFYSDNYQSISQRIYDDNVKVLNLKTGKNEFPL DKDIKDYALYFILPENKKTENWKYIISSDSVNKFTIKNDSSIEKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14469; Mature: 14469
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYNKLLKNLCLVLSTIIGLSSCISDGLYINNNIPKTKIVLESKPDKNIFYSDNYQSISQR CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCEECCCHHHHHHH IYDDNVKVLNLKTGKNEFPLDKDIKDYALYFILPENKKTENWKYIISSDSVNKFTIKNDS HCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCCC SIEKD CCCCC >Mature Secondary Structure MYNKLLKNLCLVLSTIIGLSSCISDGLYINNNIPKTKIVLESKPDKNIFYSDNYQSISQR CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCEECCCHHHHHHH IYDDNVKVLNLKTGKNEFPLDKDIKDYALYFILPENKKTENWKYIISSDSVNKFTIKNDS HCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCCC SIEKD CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA