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The map label for this gene is hfq [H]

Identifier: 89256255

GI number: 89256255

Start: 876936

End: 877265

Strand: Direct

Name: hfq [H]

Synonym: FTL_0898

Alternate gene names: 89256255

Gene position: 876936-877265 (Clockwise)

Preceding gene: 89256254

Following gene: 89256256

Centisome position: 46.25

GC content: 30.91

Gene sequence:

>330_bases
ATGTCAAGAATATCATCTTTACAAGACCCGTTCTTAAATGCTTTAAGAAAAGAAAAAGTTAGCGTATCTGTATATCTAGT
AAACGGGATCAAACTACAAGGTCAAGTAGAAGCTTTTGACCAATTCTGTATCGTACTTAGAAATACTGTTAATCAAATGG
TTTATAAACATGCTATTTCTACTATAGTTCCAGCTAAAAGTGTAAGAATGGTTTATAGCTCTTTTAATCCATATCACCAA
AATTCTAATGATGAGCAAGATGAGAATGTAGATGATATTCATTCTGATGATCTTGAAATTCAAGAGAATGAAGGTAATAT
TCACGAGTAA

Upstream 100 bases:

>100_bases
TTGCTGATAGATATAAATCTTGCTAGAATATACGCGAAGTTTAATTGTTAAACTTGATAAAATAATAACTATAACAAAAT
AATTAAAAGGAAGTGAGATA

Downstream 100 bases:

>100_bases
TATATCTTTTCTTTTTTCTTTAATAGTTCCATTGTGGAGTAATATTAGTTGATGGAATTTTTCCAATCGTATCAAGCAGG
TAGTAAGTGCCTGCTTGTAA

Product: host factor I for bacteriophage Q beta replication

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAISTIVPAKSVRMVYSSFNPYHQ
NSNDEQDENVDDIHSDDLEIQENEGNIHE

Sequences:

>Translated_109_residues
MSRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAISTIVPAKSVRMVYSSFNPYHQ
NSNDEQDENVDDIHSDDLEIQENEGNIHE
>Mature_108_residues
SRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAISTIVPAKSVRMVYSSFNPYHQN
SNDEQDENVDDIHSDDLEIQENEGNIHE

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=68, Percent_Identity=73.5294117647059, Blast_Score=114, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 12484; Mature: 12353

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAIS
CCCHHHHHHHHHHHHHHHCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVPAKSVRMVYSSFNPYHQNSNDEQDENVDDIHSDDLEIQENEGNIHE
HHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure 
SRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAIS
CCHHHHHHHHHHHHHHHCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVPAKSVRMVYSSFNPYHQNSNDEQDENVDDIHSDDLEIQENEGNIHE
HHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA