Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
---|---|
Accession | NC_007880 |
Length | 1,895,994 |
Click here to switch to the map view.
The map label for this gene is 89256227
Identifier: 89256227
GI number: 89256227
Start: 847543
End: 849000
Strand: Reverse
Name: 89256227
Synonym: FTL_0867
Alternate gene names: NA
Gene position: 849000-847543 (Counterclockwise)
Preceding gene: 89256228
Following gene: 89256223
Centisome position: 44.78
GC content: 31.07
Gene sequence:
>1458_bases ATGAAGTATATTTACAAAAAATTATTAATATATAGTTTTTTTATGTGTTCAATTTGTCACTCATATGCGGAGCTTAATAA TCAAATCTCCATTTTAGAATTACAGAAACAAATTAAAGAATTACAAACCGAGATTAATCACTTTGAAGAAACAAAAATAA ATGAAAACTTTGAATTCACAACTTATAGTAGTGAAGTTGTAGATAGTAAATCTAAATTGAGAAATAAAGAAACTAAAGTA TTATATACAGTTCAAAACAATAATGTTGACATAATCCAAAATATTAGTCCTGAAAGCACAATTATTGATCTTAGAGGAAA ACCCTTAGGTAAAATATTCAATCAAAATGGTAGTATTGATGTTGGAAATGCTCCGGCTATTACAACAGATGGCCAAGCTG CTTACCTAGGATCATATTCAGGTAACAATAGCATCCCCATAGGAATGATTCCAGGAAAACTATTTGCATCAACAATTATA TTACAAAAAGAAAAATTCGATCAATATTCTATATTTTTAGGAGGCTTAATTAGAGTAGATGCCCAAACTTGGTTTGGAGA TTCAATATCTAGGGTAGATTTTAATAATAATCCAACAACCTCTTTTGACTCCAAAGGTCAAAATATATATCTTTCTACAG CTCGTTTATTCTTTCTTGCAAATATGGGAAATTATATAACAGCTGCATATGATGTAAGCACCTCTGAATTAAACAACTTT AACATTGGAGATGCATTTGTTATAATAGGAAATATGGATGTATCGCCATACTTTATAACTGTAGGTAAAAGTACTCTAAC TATAGCAAATCTTGGTGGAGGAGGACCTTCAACAAGTGGTATTGCAAACTTCCTAAATACTGGACGAGCTACAAATATAT TACTAAATTACAAGACTAGCACCCTTAACGTTAGCGTTGCATTTTTTAGTACAAACGATCAAAAAGCAAATTTTTCGGCT GGCTTATTTTATGCTGATAAGTGGACTGATAATTTATCTGTTGGATTTAACACAGGCTATGTTTATGATTTAGCTGGTGC TGAAAACTCTAGCATTCCTAGAATCGCTTTAAATAAAACTATAGGTGCTTTTAGTATTGATGCTAACATTGCTTATACAA TTAATTCAGGGATATTTCAAATAAACTCAGGTTGGGGGTCTACCACTAATTCTTTTGATTTTAATCTAATAGGAGAGAAT GTCTTAGCTGGAGCGTGGTATATTGCGGGTAACTATAGTGCAAATATATTTGGAAGAAATAGTAATTTTAATGCTACATA TGGTGAAAGTTATAATGCTGCGGCGATACAATGTCTATCGCCGGAAGTCGATTACAAAATGGATTATCAAAATCGGGCAT TAAAAGACAAATTAATTTTTCAGCCCAAAGATCATATTTCGATGACAGTGTACTATTTGGTCCTGAATATGCATATCAAA AATTTTATAATGATGTAA
Upstream 100 bases:
>100_bases GTACTTTTATTTGGCTACTGAGAAACTATTTTTGTGCACAGAACCTAATATTTTTTACAAAATGATACAATGAACTGAGA GTTGTATTTTTTATATAGTT
Downstream 100 bases:
>100_bases AACACCATGCATTATCTTTAGATATGTCAATATATTTATAGAGCTATTTCTATCTATACTTTTAAGTTTTAGATAGCGAG AGTGTAAACTAAAAGATAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 485; Mature: 485
Protein sequence:
>485_residues MKYIYKKLLIYSFFMCSICHSYAELNNQISILELQKQIKELQTEINHFEETKINENFEFTTYSSEVVDSKSKLRNKETKV LYTVQNNNVDIIQNISPESTIIDLRGKPLGKIFNQNGSIDVGNAPAITTDGQAAYLGSYSGNNSIPIGMIPGKLFASTII LQKEKFDQYSIFLGGLIRVDAQTWFGDSISRVDFNNNPTTSFDSKGQNIYLSTARLFFLANMGNYITAAYDVSTSELNNF NIGDAFVIIGNMDVSPYFITVGKSTLTIANLGGGGPSTSGIANFLNTGRATNILLNYKTSTLNVSVAFFSTNDQKANFSA GLFYADKWTDNLSVGFNTGYVYDLAGAENSSIPRIALNKTIGAFSIDANIAYTINSGIFQINSGWGSTTNSFDFNLIGEN VLAGAWYIAGNYSANIFGRNSNFNATYGESYNAAAIQCLSPEVDYKMDYQNRALKDKLIFQPKDHISMTVYYLVLNMHIK NFIMM
Sequences:
>Translated_485_residues MKYIYKKLLIYSFFMCSICHSYAELNNQISILELQKQIKELQTEINHFEETKINENFEFTTYSSEVVDSKSKLRNKETKV LYTVQNNNVDIIQNISPESTIIDLRGKPLGKIFNQNGSIDVGNAPAITTDGQAAYLGSYSGNNSIPIGMIPGKLFASTII LQKEKFDQYSIFLGGLIRVDAQTWFGDSISRVDFNNNPTTSFDSKGQNIYLSTARLFFLANMGNYITAAYDVSTSELNNF NIGDAFVIIGNMDVSPYFITVGKSTLTIANLGGGGPSTSGIANFLNTGRATNILLNYKTSTLNVSVAFFSTNDQKANFSA GLFYADKWTDNLSVGFNTGYVYDLAGAENSSIPRIALNKTIGAFSIDANIAYTINSGIFQINSGWGSTTNSFDFNLIGEN VLAGAWYIAGNYSANIFGRNSNFNATYGESYNAAAIQCLSPEVDYKMDYQNRALKDKLIFQPKDHISMTVYYLVLNMHIK NFIMM >Mature_485_residues MKYIYKKLLIYSFFMCSICHSYAELNNQISILELQKQIKELQTEINHFEETKINENFEFTTYSSEVVDSKSKLRNKETKV LYTVQNNNVDIIQNISPESTIIDLRGKPLGKIFNQNGSIDVGNAPAITTDGQAAYLGSYSGNNSIPIGMIPGKLFASTII LQKEKFDQYSIFLGGLIRVDAQTWFGDSISRVDFNNNPTTSFDSKGQNIYLSTARLFFLANMGNYITAAYDVSTSELNNF NIGDAFVIIGNMDVSPYFITVGKSTLTIANLGGGGPSTSGIANFLNTGRATNILLNYKTSTLNVSVAFFSTNDQKANFSA GLFYADKWTDNLSVGFNTGYVYDLAGAENSSIPRIALNKTIGAFSIDANIAYTINSGIFQINSGWGSTTNSFDFNLIGEN VLAGAWYIAGNYSANIFGRNSNFNATYGESYNAAAIQCLSPEVDYKMDYQNRALKDKLIFQPKDHISMTVYYLVLNMHIK NFIMM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53738; Mature: 53738
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYIYKKLLIYSFFMCSICHSYAELNNQISILELQKQIKELQTEINHFEETKINENFEFT CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE TYSSEVVDSKSKLRNKETKVLYTVQNNNVDIIQNISPESTIIDLRGKPLGKIFNQNGSID EECHHHHCCHHHHCCCCCEEEEEEECCCEEEEECCCCCCEEEEECCCCHHHHHCCCCCEE VGNAPAITTDGQAAYLGSYSGNNSIPIGMIPGKLFASTIILQKEKFDQYSIFLGGLIRVD CCCCCEEECCCCEEEEECCCCCCCEEEEECCHHHHHHEEEEECCCCCCEEEEECCEEEEE AQTWFGDSISRVDFNNNPTTSFDSKGQNIYLSTARLFFLANMGNYITAAYDVSTSELNNF CCHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCHHHCCCC NIGDAFVIIGNMDVSPYFITVGKSTLTIANLGGGGPSTSGIANFLNTGRATNILLNYKTS CCCCEEEEEECCCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEEEEEE TLNVSVAFFSTNDQKANFSAGLFYADKWTDNLSVGFNTGYVYDLAGAENSSIPRIALNKT EEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEECCC IGAFSIDANIAYTINSGIFQINSGWGSTTNSFDFNLIGENVLAGAWYIAGNYSANIFGRN CCEEEECCEEEEEEECCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEECCEEEEEECC SNFNATYGESYNAAAIQCLSPEVDYKMDYQNRALKDKLIFQPKDHISMTVYYLVLNMHIK CCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHEEECCCCHHEEEEEEEHHHHHHH NFIMM HHCCC >Mature Secondary Structure MKYIYKKLLIYSFFMCSICHSYAELNNQISILELQKQIKELQTEINHFEETKINENFEFT CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE TYSSEVVDSKSKLRNKETKVLYTVQNNNVDIIQNISPESTIIDLRGKPLGKIFNQNGSID EECHHHHCCHHHHCCCCCEEEEEEECCCEEEEECCCCCCEEEEECCCCHHHHHCCCCCEE VGNAPAITTDGQAAYLGSYSGNNSIPIGMIPGKLFASTIILQKEKFDQYSIFLGGLIRVD CCCCCEEECCCCEEEEECCCCCCCEEEEECCHHHHHHEEEEECCCCCCEEEEECCEEEEE AQTWFGDSISRVDFNNNPTTSFDSKGQNIYLSTARLFFLANMGNYITAAYDVSTSELNNF CCHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCHHHCCCC NIGDAFVIIGNMDVSPYFITVGKSTLTIANLGGGGPSTSGIANFLNTGRATNILLNYKTS CCCCEEEEEECCCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEEEEEE TLNVSVAFFSTNDQKANFSAGLFYADKWTDNLSVGFNTGYVYDLAGAENSSIPRIALNKT EEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEECCC IGAFSIDANIAYTINSGIFQINSGWGSTTNSFDFNLIGENVLAGAWYIAGNYSANIFGRN CCEEEECCEEEEEEECCEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEECCEEEEEECC SNFNATYGESYNAAAIQCLSPEVDYKMDYQNRALKDKLIFQPKDHISMTVYYLVLNMHIK CCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHEEECCCCHHEEEEEEEHHHHHHH NFIMM HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA