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The map label for this gene is yrkF [H]

Identifier: 89256194

GI number: 89256194

Start: 817058

End: 817807

Strand: Reverse

Name: yrkF [H]

Synonym: FTL_0834

Alternate gene names: 89256194

Gene position: 817807-817058 (Counterclockwise)

Preceding gene: 89256195

Following gene: 89256193

Centisome position: 43.13

GC content: 33.73

Gene sequence:

>750_bases
ATGCAACACTCATCAGGTTTTTTAAAATTAGTAGATGACGCAAAATCTAGAATACAAGAATGTAGCGTTGATGATATTCA
AAAAATGAATGAAACACAAACACTTGATGGTTTACTTATAGACACTCGCGAAGAGTCAGAAGTAGCTAATGGATATATTC
CAAATGCTATTCATCTAAGTAAAGGAATTATTGAGAGCGCTATTGAATCAGCTGTTCCTAACAAAAACCAAAAAATGTAT
TTTTATTGTGGTGGTGGCTTTAGATCTGCTTTAGTAGCAGATAAGCTTCGCGAGATGGGTTATAAAAATGTTATTTCTGT
TGATGGTGGATGGAGAGCATGGAATGCTAAAGGTTACCCTACAGTCTCACCTAATCAGTTCAGACCGAATGAATTTTTAA
AACTTGTCAATAATGCGAAAACCCAAATAAAAGAATGCTCTACAACTGAACTATACAATAAGATTAATTCTCAAGAACTT
GATGGTATAGTTTTTGATGTTAGAGAAGACTCTGAATTTAACAGATTCCACATTCAAGGAGCTACACATCTAAGTAAAGG
ACAAATTGAAGTAAAAATTGAAAACTTAGTACCTAACAAACAACAAAAAATATACTTATATTGTGGCAGTGGTTTTCGCT
CAGCTTTAGCAGCAGAAAGCTTACAGCATATGGGTTATACAAACGTAGTTTCTATAGCTGGTGGAATCAAGGATTGGCTA
GCTAATAACTATCCAGTTTCTCAAAATTAA

Upstream 100 bases:

>100_bases
TTCAGATTGTAGATTATATCCTTTAATTATTCTCTTTAAGCAGATAAAAATATAAAATACTTAATAGTTAAACAACCAAA
AAAATTATAAGGTGAAAATT

Downstream 100 bases:

>100_bases
GGATAAAGAATAATGTCATTTCGTATAGGTCATGGTTATGATGTGCATAAGTTCACTTCAGCAAAGCAAAATATCATTAT
TGGTGGAGTCGAAATTGCTT

Product: rhodanese-like family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MQHSSGFLKLVDDAKSRIQECSVDDIQKMNETQTLDGLLIDTREESEVANGYIPNAIHLSKGIIESAIESAVPNKNQKMY
FYCGGGFRSALVADKLREMGYKNVISVDGGWRAWNAKGYPTVSPNQFRPNEFLKLVNNAKTQIKECSTTELYNKINSQEL
DGIVFDVREDSEFNRFHIQGATHLSKGQIEVKIENLVPNKQQKIYLYCGSGFRSALAAESLQHMGYTNVVSIAGGIKDWL
ANNYPVSQN

Sequences:

>Translated_249_residues
MQHSSGFLKLVDDAKSRIQECSVDDIQKMNETQTLDGLLIDTREESEVANGYIPNAIHLSKGIIESAIESAVPNKNQKMY
FYCGGGFRSALVADKLREMGYKNVISVDGGWRAWNAKGYPTVSPNQFRPNEFLKLVNNAKTQIKECSTTELYNKINSQEL
DGIVFDVREDSEFNRFHIQGATHLSKGQIEVKIENLVPNKQQKIYLYCGSGFRSALAAESLQHMGYTNVVSIAGGIKDWL
ANNYPVSQN
>Mature_249_residues
MQHSSGFLKLVDDAKSRIQECSVDDIQKMNETQTLDGLLIDTREESEVANGYIPNAIHLSKGIIESAIESAVPNKNQKMY
FYCGGGFRSALVADKLREMGYKNVISVDGGWRAWNAKGYPTVSPNQFRPNEFLKLVNNAKTQIKECSTTELYNKINSQEL
DGIVFDVREDSEFNRFHIQGATHLSKGQIEVKIENLVPNKQQKIYLYCGSGFRSALAAESLQHMGYTNVVSIAGGIKDWL
ANNYPVSQN

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR001455 [H]

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA [H]

EC number: NA

Molecular weight: Translated: 27865; Mature: 27865

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHSSGFLKLVDDAKSRIQECSVDDIQKMNETQTLDGLLIDTREESEVANGYIPNAIHLS
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCEEEECCCHHHHHCCCCCCHHHHH
KGIIESAIESAVPNKNQKMYFYCGGGFRSALVADKLREMGYKNVISVDGGWRAWNAKGYP
HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCC
TVSPNQFRPNEFLKLVNNAKTQIKECSTTELYNKINSQELDGIVFDVREDSEFNRFHIQG
CCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECC
ATHLSKGQIEVKIENLVPNKQQKIYLYCGSGFRSALAAESLQHMGYTNVVSIAGGIKDWL
CCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHH
ANNYPVSQN
CCCCCCCCC
>Mature Secondary Structure
MQHSSGFLKLVDDAKSRIQECSVDDIQKMNETQTLDGLLIDTREESEVANGYIPNAIHLS
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCEEEECCCHHHHHCCCCCCHHHHH
KGIIESAIESAVPNKNQKMYFYCGGGFRSALVADKLREMGYKNVISVDGGWRAWNAKGYP
HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCC
TVSPNQFRPNEFLKLVNNAKTQIKECSTTELYNKINSQELDGIVFDVREDSEFNRFHIQG
CCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECC
ATHLSKGQIEVKIENLVPNKQQKIYLYCGSGFRSALAAESLQHMGYTNVVSIAGGIKDWL
CCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHH
ANNYPVSQN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]