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The map label for this gene is yjdL [H]

Identifier: 89256100

GI number: 89256100

Start: 701797

End: 702390

Strand: Direct

Name: yjdL [H]

Synonym: FTL_0711

Alternate gene names: 89256100

Gene position: 701797-702390 (Clockwise)

Preceding gene: 89256098

Following gene: 89256101

Centisome position: 37.01

GC content: 31.14

Gene sequence:

>594_bases
GTGATTTATGGTGCTGTACTTATGTCTATTGGTCATATTATTCTTGGGTTTGGTGGAGATAGTAAATTATATCTTGGCAT
GGCATTTATAGTTTGTGGTTATGGCTTTTTTAAAAGTAATGTATCTTGTTTGTTAGGTCAGCAGTATAATTCTGATGATT
CAAATAAAGATTCAGCTTTTACATTATTATACTTGGGTGGGAATTTCGGTGGGATATTTGCACCTATGCTATGTGGTTTG
GTGGCACATTATTATGGTTGGCATTATGGTTTTGGTATCGCTGGTATTGGAATGATATTTGGTTTAGCTGTATTTATGTT
AGGTTCTAAATATATTCCAGATGTTCTTCCGCAAAAAACTTTATCAAAACAGTTACAAAATTTAGTTGTGGTTTTTAGTA
TATTGTTAATACTGACTCTAAGTTACTTGGCTTTAGAATATCTTTTTGATGGTTATCTATTAGCAGTAGTTACATGTATT
ACTGCAATAGCTTTTGTAGTTATTTTTATTAGAACAGATGCTAGTACACGCAAATCATTAATTGCACTATTGCCTTTTTT
TATTTTTGGCATAGTTTTTTGGATGTTTGATTAG

Upstream 100 bases:

>100_bases
TTAGTTTCTATGGTATGAGAGCTCTGTTGATACTATATTTGGTAGATCACCTATAGTTGGCGGGGTTGTCGCTGATAGGA
TATTGGGTTATAAAAAGGCA

Downstream 100 bases:

>100_bases
CAGTTATATACTTCGGTAGAAATTTTTATACATAGAAACGTCGATACATATTTATGGGGAATTGATATTCCTGCAAGTAC
TTTTACTTCTATGAATTCAC

Product: proton-dependent oligopeptide transport (POT) family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MIYGAVLMSIGHIILGFGGDSKLYLGMAFIVCGYGFFKSNVSCLLGQQYNSDDSNKDSAFTLLYLGGNFGGIFAPMLCGL
VAHYYGWHYGFGIAGIGMIFGLAVFMLGSKYIPDVLPQKTLSKQLQNLVVVFSILLILTLSYLALEYLFDGYLLAVVTCI
TAIAFVVIFIRTDASTRKSLIALLPFFIFGIVFWMFD

Sequences:

>Translated_197_residues
MIYGAVLMSIGHIILGFGGDSKLYLGMAFIVCGYGFFKSNVSCLLGQQYNSDDSNKDSAFTLLYLGGNFGGIFAPMLCGL
VAHYYGWHYGFGIAGIGMIFGLAVFMLGSKYIPDVLPQKTLSKQLQNLVVVFSILLILTLSYLALEYLFDGYLLAVVTCI
TAIAFVVIFIRTDASTRKSLIALLPFFIFGIVFWMFD
>Mature_197_residues
MIYGAVLMSIGHIILGFGGDSKLYLGMAFIVCGYGFFKSNVSCLLGQQYNSDDSNKDSAFTLLYLGGNFGGIFAPMLCGL
VAHYYGWHYGFGIAGIGMIFGLAVFMLGSKYIPDVLPQKTLSKQLQNLVVVFSILLILTLSYLALEYLFDGYLLAVVTCI
TAIAFVVIFIRTDASTRKSLIALLPFFIFGIVFWMFD

Specific function: Probable proton-dependent permease that transports di- and tripeptides. Shows significantly higher specificity towards dipeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Escherichia coli, GI1790572, Length=203, Percent_Identity=39.9014778325123, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1786927, Length=202, Percent_Identity=38.1188118811881, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1787922, Length=194, Percent_Identity=27.319587628866, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789911, Length=205, Percent_Identity=25.3658536585366, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 21642; Mature: 21642

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYGAVLMSIGHIILGFGGDSKLYLGMAFIVCGYGFFKSNVSCLLGQQYNSDDSNKDSAF
CHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCEE
TLLYLGGNFGGIFAPMLCGLVAHYYGWHYGFGIAGIGMIFGLAVFMLGSKYIPDVLPQKT
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHH
LSKQLQNLVVVFSILLILTLSYLALEYLFDGYLLAVVTCITAIAFVVIFIRTDASTRKSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IALLPFFIFGIVFWMFD
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIYGAVLMSIGHIILGFGGDSKLYLGMAFIVCGYGFFKSNVSCLLGQQYNSDDSNKDSAF
CHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCEE
TLLYLGGNFGGIFAPMLCGLVAHYYGWHYGFGIAGIGMIFGLAVFMLGSKYIPDVLPQKT
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHH
LSKQLQNLVVVFSILLILTLSYLALEYLFDGYLLAVVTCITAIAFVVIFIRTDASTRKSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IALLPFFIFGIVFWMFD
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]