Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
---|---|
Accession | NC_007880 |
Length | 1,895,994 |
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The map label for this gene is fadD [H]
Identifier: 89256079
GI number: 89256079
Start: 677538
End: 679229
Strand: Reverse
Name: fadD [H]
Synonym: FTL_0690
Alternate gene names: 89256079
Gene position: 679229-677538 (Counterclockwise)
Preceding gene: 89256080
Following gene: 89256077
Centisome position: 35.82
GC content: 32.39
Gene sequence:
>1692_bases ATGAGTACATTTTCCAATAAAACATGGATAGCTAATTATCCTGATTATACTCCTGAGAATATTACGGAAAACCACGCTAC AATTTTAGATCTATATGAAAAAACAATTATACAATTTCCTTACAGAGAGGCTGTATCATGTCACGATGTAAATCTAACTT TTATTGAACTTGACAAGCTTGCTACTAAAATGGCTAGTTTTCTACAAAACAACCTTGGAATCAACAAGGGAGATAGAGTC GCAATTGTACTACCTAACTGCTTACAATTTACTGTTAGCTTATTTGCATGTGTTAAGATTGGTGCTGTATTTGTCAACAT CAACCCTCTTTATACTGCAGATGAGATTGAAGCAATATTTAATAATTGTAATGTCAAAGCTGCGATTGTAATGGATATGT TTGCCCATCATATACAAAAAGCTCGTGTAAACATCGACTCTTTAGAGAATGTAATAGTTACAAATATTGCTGATTTATAC CCATTTCCTAAAAAACAGATTATTGGTTTTGTCTCTAAATATTTAATTGAAAATAAACCAAAGTATACAAAAAGTAATTT TATTGCGTTTAGTAAAGTCATCAAAGCTGACATAAGTTTATATAAAAAACCTGTTTTAACAAAACAAGATATACTATGTT TGCAATACTCAAGTGGAACAACTGGAAGACCTAAAGGAGCAATACTAACGCATGATAATCTTGCTTCAAATATTCAGCAA GTTTGGGCATGGATCAAACATGACATGGATATGTCTGATCAAGTAATTATAACTGCACTACCTCTTTACCATATATTCTC ACTAAGTGCTAATTTACTTTGCTTCTTTTTTGCTGGTGCAAAAAATGTCTTAATTCCCAATGCTAGAGATATAAAAAACC TCATTAAGACTATGTCAAAAAATGAATTCACTATTTTTAATGGTCTTAACACCCTCTATATGGCAATGCTTGAGCATCCT GATTTTGGGAAAATTAACAAAACAAGATATCTATATTCTTTAAGCGGGGGCATGCCAATTTCACGTAAAATATATTTAGA GTGGTTAGATAGAACTGGTGTAGAACTAAAAGAGGGTTATGGTATGACTGAAATGTCTCCGGCAATCGCTCTAAATAAAT TCAACGAGTCTGAGGATGATTATTTTGGTACTTGTGGCTACCCTATTCCGAGCACAGAGCTCAGTATTCGTGATATCCAT ACTCACCAAGAAATAACTGAGTATTTCAAAGAAGGTGAAATCTGGCTTAAAGGTCCACAAAGATGTCAAGGTTTCTGGAA TGATAAAGAGAATAATGAACTTCACTTTACTGCAGATGGTTGGCTAAAAACTGGAGATATTGGCTATATAGACAAAAAAG GTCGTCTAACTATATCCGATAGAATTAAAAATATGATAATTGTCTCCGGTTTTAATGTTTATCCGAGAGAAATTGAGTTA TGCATACTTAAGTTAGACTATGTAAGAGAGGTAGCTGTCACTGGAATTAAGTCAAAAACATCTGGTGAAAGACCTATAGC TTTTATCTCATTGGAAAAAGGCTCAAATGCAACTGAGGAAGATATTATCAAACATTGCAAAGATAAATTAGCAAGCTATA AAGTCCCTAGATCATGTATATTTGTAGAAACTCTACCAAAAAATAATACTAGTAAAATAGATATTAAGAAACTAAAAAAT CAGTTCTTATAA
Upstream 100 bases:
>100_bases TAATTTAACACCTTCTAATAAAGAAATAATCTTGCAAATTTATTTCAATACTTTGTTTTTTTGCTAGAATTAGTTCTAGT AATTAACAATCTTATTTATT
Downstream 100 bases:
>100_bases ATATTTTTTATCTGTACTCTTTCACTAGAGAAATACTGTTTTGGTGTTTTACCAAATGCCTTGCGAAACATTGCTATAAA ATTACTTGGTGAAGCATATC
Product: Acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase; Acyl-CoA synthetase [H]
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MSTFSNKTWIANYPDYTPENITENHATILDLYEKTIIQFPYREAVSCHDVNLTFIELDKLATKMASFLQNNLGINKGDRV AIVLPNCLQFTVSLFACVKIGAVFVNINPLYTADEIEAIFNNCNVKAAIVMDMFAHHIQKARVNIDSLENVIVTNIADLY PFPKKQIIGFVSKYLIENKPKYTKSNFIAFSKVIKADISLYKKPVLTKQDILCLQYSSGTTGRPKGAILTHDNLASNIQQ VWAWIKHDMDMSDQVIITALPLYHIFSLSANLLCFFFAGAKNVLIPNARDIKNLIKTMSKNEFTIFNGLNTLYMAMLEHP DFGKINKTRYLYSLSGGMPISRKIYLEWLDRTGVELKEGYGMTEMSPAIALNKFNESEDDYFGTCGYPIPSTELSIRDIH THQEITEYFKEGEIWLKGPQRCQGFWNDKENNELHFTADGWLKTGDIGYIDKKGRLTISDRIKNMIIVSGFNVYPREIEL CILKLDYVREVAVTGIKSKTSGERPIAFISLEKGSNATEEDIIKHCKDKLASYKVPRSCIFVETLPKNNTSKIDIKKLKN QFL
Sequences:
>Translated_563_residues MSTFSNKTWIANYPDYTPENITENHATILDLYEKTIIQFPYREAVSCHDVNLTFIELDKLATKMASFLQNNLGINKGDRV AIVLPNCLQFTVSLFACVKIGAVFVNINPLYTADEIEAIFNNCNVKAAIVMDMFAHHIQKARVNIDSLENVIVTNIADLY PFPKKQIIGFVSKYLIENKPKYTKSNFIAFSKVIKADISLYKKPVLTKQDILCLQYSSGTTGRPKGAILTHDNLASNIQQ VWAWIKHDMDMSDQVIITALPLYHIFSLSANLLCFFFAGAKNVLIPNARDIKNLIKTMSKNEFTIFNGLNTLYMAMLEHP DFGKINKTRYLYSLSGGMPISRKIYLEWLDRTGVELKEGYGMTEMSPAIALNKFNESEDDYFGTCGYPIPSTELSIRDIH THQEITEYFKEGEIWLKGPQRCQGFWNDKENNELHFTADGWLKTGDIGYIDKKGRLTISDRIKNMIIVSGFNVYPREIEL CILKLDYVREVAVTGIKSKTSGERPIAFISLEKGSNATEEDIIKHCKDKLASYKVPRSCIFVETLPKNNTSKIDIKKLKN QFL >Mature_562_residues STFSNKTWIANYPDYTPENITENHATILDLYEKTIIQFPYREAVSCHDVNLTFIELDKLATKMASFLQNNLGINKGDRVA IVLPNCLQFTVSLFACVKIGAVFVNINPLYTADEIEAIFNNCNVKAAIVMDMFAHHIQKARVNIDSLENVIVTNIADLYP FPKKQIIGFVSKYLIENKPKYTKSNFIAFSKVIKADISLYKKPVLTKQDILCLQYSSGTTGRPKGAILTHDNLASNIQQV WAWIKHDMDMSDQVIITALPLYHIFSLSANLLCFFFAGAKNVLIPNARDIKNLIKTMSKNEFTIFNGLNTLYMAMLEHPD FGKINKTRYLYSLSGGMPISRKIYLEWLDRTGVELKEGYGMTEMSPAIALNKFNESEDDYFGTCGYPIPSTELSIRDIHT HQEITEYFKEGEIWLKGPQRCQGFWNDKENNELHFTADGWLKTGDIGYIDKKGRLTISDRIKNMIIVSGFNVYPREIELC ILKLDYVREVAVTGIKSKTSGERPIAFISLEKGSNATEEDIIKHCKDKLASYKVPRSCIFVETLPKNNTSKIDIKKLKNQ FL
Specific function: Catalyzes the esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Membrane; Peripheral membrane protein (Potential). Note=Partially membrane-associated (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=552, Percent_Identity=27.536231884058, Blast_Score=195, Evalue=9e-50, Organism=Homo sapiens, GI187761345, Length=384, Percent_Identity=30.2083333333333, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI187761343, Length=384, Percent_Identity=30.2083333333333, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI122937307, Length=530, Percent_Identity=24.9056603773585, Blast_Score=122, Evalue=8e-28, Organism=Homo sapiens, GI38505220, Length=532, Percent_Identity=24.0601503759398, Blast_Score=119, Evalue=8e-27, Organism=Homo sapiens, GI42544132, Length=532, Percent_Identity=23.3082706766917, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI115511026, Length=530, Percent_Identity=24.1509433962264, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI157311624, Length=520, Percent_Identity=23.2692307692308, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI157311622, Length=520, Percent_Identity=23.2692307692308, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI42794760, Length=465, Percent_Identity=26.2365591397849, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI42794758, Length=465, Percent_Identity=26.2365591397849, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI42794756, Length=465, Percent_Identity=26.2365591397849, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI58082049, Length=520, Percent_Identity=22.6923076923077, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI13375727, Length=548, Percent_Identity=24.8175182481752, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI40807491, Length=436, Percent_Identity=25.4587155963303, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI57165412, Length=493, Percent_Identity=23.1237322515213, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI57165410, Length=499, Percent_Identity=23.0460921843687, Blast_Score=89, Evalue=1e-17, Organism=Escherichia coli, GI1788107, Length=557, Percent_Identity=36.983842010772, Blast_Score=395, Evalue=1e-111, Organism=Escherichia coli, GI145693145, Length=535, Percent_Identity=25.7943925233645, Blast_Score=165, Evalue=7e-42, Organism=Escherichia coli, GI221142682, Length=514, Percent_Identity=27.8210116731518, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1789201, Length=535, Percent_Identity=23.9252336448598, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1786810, Length=516, Percent_Identity=22.093023255814, Blast_Score=102, Evalue=6e-23, Organism=Escherichia coli, GI1788595, Length=354, Percent_Identity=25.7062146892655, Blast_Score=88, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17558820, Length=513, Percent_Identity=28.6549707602339, Blast_Score=193, Evalue=2e-49, Organism=Caenorhabditis elegans, GI32563687, Length=520, Percent_Identity=28.8461538461538, Blast_Score=188, Evalue=7e-48, Organism=Caenorhabditis elegans, GI17560308, Length=564, Percent_Identity=25.886524822695, Blast_Score=178, Evalue=6e-45, Organism=Caenorhabditis elegans, GI71994703, Length=545, Percent_Identity=25.6880733944954, Blast_Score=175, Evalue=6e-44, Organism=Caenorhabditis elegans, GI71994694, Length=545, Percent_Identity=25.6880733944954, Blast_Score=175, Evalue=7e-44, Organism=Caenorhabditis elegans, GI71994690, Length=545, Percent_Identity=25.6880733944954, Blast_Score=174, Evalue=8e-44, Organism=Caenorhabditis elegans, GI17559526, Length=564, Percent_Identity=27.1276595744681, Blast_Score=170, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17531443, Length=367, Percent_Identity=30.7901907356948, Blast_Score=158, Evalue=6e-39, Organism=Caenorhabditis elegans, GI17557194, Length=502, Percent_Identity=27.4900398406374, Blast_Score=156, Evalue=3e-38, Organism=Caenorhabditis elegans, GI17538037, Length=502, Percent_Identity=26.0956175298805, Blast_Score=154, Evalue=2e-37, Organism=Caenorhabditis elegans, GI71996755, Length=567, Percent_Identity=26.4550264550265, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17560140, Length=341, Percent_Identity=29.0322580645161, Blast_Score=141, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17556552, Length=535, Percent_Identity=26.5420560747664, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI71985884, Length=582, Percent_Identity=23.1958762886598, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17510401, Length=339, Percent_Identity=27.7286135693215, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17564090, Length=344, Percent_Identity=27.6162790697674, Blast_Score=89, Evalue=8e-18, Organism=Caenorhabditis elegans, GI115534440, Length=541, Percent_Identity=22.181146025878, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193204819, Length=150, Percent_Identity=32, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6319699, Length=533, Percent_Identity=24.015009380863, Blast_Score=125, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6320852, Length=345, Percent_Identity=25.7971014492754, Blast_Score=104, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6324893, Length=352, Percent_Identity=25.8522727272727, Blast_Score=101, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6319264, Length=590, Percent_Identity=23.3898305084746, Blast_Score=97, Evalue=7e-21, Organism=Drosophila melanogaster, GI18859661, Length=527, Percent_Identity=28.4629981024668, Blast_Score=219, Evalue=5e-57, Organism=Drosophila melanogaster, GI24581924, Length=531, Percent_Identity=25.6120527306968, Blast_Score=167, Evalue=1e-41, Organism=Drosophila melanogaster, GI21355181, Length=532, Percent_Identity=27.8195488721804, Blast_Score=165, Evalue=1e-40, Organism=Drosophila melanogaster, GI21356441, Length=522, Percent_Identity=25.095785440613, Blast_Score=102, Evalue=5e-22, Organism=Drosophila melanogaster, GI19921316, Length=496, Percent_Identity=24.1935483870968, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI19922652, Length=518, Percent_Identity=23.3590733590734, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24648253, Length=519, Percent_Identity=24.8554913294798, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI21358303, Length=527, Percent_Identity=22.5806451612903, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24648255, Length=531, Percent_Identity=24.6704331450094, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI24653035, Length=207, Percent_Identity=29.951690821256, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI24656500, Length=387, Percent_Identity=26.3565891472868, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI24648260, Length=530, Percent_Identity=20.9433962264151, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI281365686, Length=536, Percent_Identity=22.9477611940299, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI21356947, Length=523, Percent_Identity=23.5181644359465, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI161076582, Length=203, Percent_Identity=28.0788177339901, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI24648257, Length=370, Percent_Identity=24.8648648648649, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI20130357, Length=353, Percent_Identity=24.3626062322946, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 64069; Mature: 63938
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFSNKTWIANYPDYTPENITENHATILDLYEKTIIQFPYREAVSCHDVNLTFIELDKL CCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCEECCEEEEEEHHHH ATKMASFLQNNLGINKGDRVAIVLPNCLQFTVSLFACVKIGAVFVNINPLYTADEIEAIF HHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHH NNCNVKAAIVMDMFAHHIQKARVNIDSLENVIVTNIADLYPFPKKQIIGFVSKYLIENKP HCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC KYTKSNFIAFSKVIKADISLYKKPVLTKQDILCLQYSSGTTGRPKGAILTHDNLASNIQQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHH VWAWIKHDMDMSDQVIITALPLYHIFSLSANLLCFFFAGAKNVLIPNARDIKNLIKTMSK HHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHEEEEEEECCCCEECCCHHHHHHHHHHHCC NEFTIFNGLNTLYMAMLEHPDFGKINKTRYLYSLSGGMPISRKIYLEWLDRTGVELKEGY CCEEEECCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHEEEHHCCCCCHHHCC GMTEMSPAIALNKFNESEDDYFGTCGYPIPSTELSIRDIHTHQEITEYFKEGEIWLKGPQ CCCCCCHHHEEECCCCCCCCCEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEECCCH RCQGFWNDKENNELHFTADGWLKTGDIGYIDKKGRLTISDRIKNMIIVSGFNVYPREIEL HHCCCCCCCCCCEEEEEECCCEEECCEEEECCCCCEEHHHHHCCEEEEECCCCCCCEEEE CILKLDYVREVAVTGIKSKTSGERPIAFISLEKGSNATEEDIIKHCKDKLASYKVPRSCI EEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEE FVETLPKNNTSKIDIKKLKNQFL EEEECCCCCCCEEHHHHHHHHCC >Mature Secondary Structure STFSNKTWIANYPDYTPENITENHATILDLYEKTIIQFPYREAVSCHDVNLTFIELDKL CCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCEECCEEEEEEHHHH ATKMASFLQNNLGINKGDRVAIVLPNCLQFTVSLFACVKIGAVFVNINPLYTADEIEAIF HHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHH NNCNVKAAIVMDMFAHHIQKARVNIDSLENVIVTNIADLYPFPKKQIIGFVSKYLIENKP HCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC KYTKSNFIAFSKVIKADISLYKKPVLTKQDILCLQYSSGTTGRPKGAILTHDNLASNIQQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHH VWAWIKHDMDMSDQVIITALPLYHIFSLSANLLCFFFAGAKNVLIPNARDIKNLIKTMSK HHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHEEEEEEECCCCEECCCHHHHHHHHHHHCC NEFTIFNGLNTLYMAMLEHPDFGKINKTRYLYSLSGGMPISRKIYLEWLDRTGVELKEGY CCEEEECCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHEEEHHCCCCCHHHCC GMTEMSPAIALNKFNESEDDYFGTCGYPIPSTELSIRDIHTHQEITEYFKEGEIWLKGPQ CCCCCCHHHEEECCCCCCCCCEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEECCCH RCQGFWNDKENNELHFTADGWLKTGDIGYIDKKGRLTISDRIKNMIIVSGFNVYPREIEL HHCCCCCCCCCCEEEEEECCCEEECCEEEECCCCCEEHHHHHCCEEEEECCCCCCCEEEE CILKLDYVREVAVTGIKSKTSGERPIAFISLEKGSNATEEDIIKHCKDKLASYKVPRSCI EEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEE FVETLPKNNTSKIDIKKLKNQFL EEEECCCCCCCEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]