Click here to switch to the map view.

The map label for this gene is skp [H]

Identifier: 89255943

GI number: 89255943

Start: 520183

End: 520686

Strand: Direct

Name: skp [H]

Synonym: FTL_0536

Alternate gene names: 89255943

Gene position: 520183-520686 (Clockwise)

Preceding gene: 89255942

Following gene: 89255944

Centisome position: 27.44

GC content: 31.15

Gene sequence:

>504_bases
ATGAAAAAAATTGCTTTATCAATATGCGTTTTAGCAAGTGCATTTACCGCAGCGTATGCAGATACTAAAATAGCAGTAGT
TAATCCAGTTGAGATCTTCAATGATTCTGATCTAGGATCTGTAAGTGTTAAAAAACTTGAAAATGATCTTAAACCAGATG
CTACTAAGCTTAAGCAAGAACAAGATAATATCATGCAACAGATGAAAACTTTGCAAAATAATTCTGCAACAATGACTAAG
AGTGAATTAGATAAGAAACAGCAACAGATTCAACAAGAGCAACAGAATTTTGCTGAAAAAGCACGAATCTTACAACAAAA
AGAATATACAGCAAAAGATAAACTATCAAAGAAATTCCAAGCTTCATTTGACAAAGCTGTTCAAACCATAGCTAAGCAAA
AAAATTATAATGTTGTGCTTACAACACAAGCTTTAGCGTATGTTAATAATGTTGATGATATATCTAGTCAAGTTGTTGAG
TTGATGAATAAAGACTCTGAATAA

Upstream 100 bases:

>100_bases
TTTAATTGGATAGGTATCTAAAACGGTTTAACAACTTTGATAATATTGTGTTAGAATCTATTATTAAATAATACTAATAA
ATTTAAAGGAGATCTTCTTA

Downstream 100 bases:

>100_bases
TTCTAAGGAGTTTTATTGATGTATAGTTTAGATTTTCTAGCGTCAAAGCTTGATGGTGAGGTTAAGGGCGATAAGAATGT
CGAGATAAAAAAAATAGCTA

Product: outer membrane protein OmpH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKKIALSICVLASAFTAAYADTKIAVVNPVEIFNDSDLGSVSVKKLENDLKPDATKLKQEQDNIMQQMKTLQNNSATMTK
SELDKKQQQIQQEQQNFAEKARILQQKEYTAKDKLSKKFQASFDKAVQTIAKQKNYNVVLTTQALAYVNNVDDISSQVVE
LMNKDSE

Sequences:

>Translated_167_residues
MKKIALSICVLASAFTAAYADTKIAVVNPVEIFNDSDLGSVSVKKLENDLKPDATKLKQEQDNIMQQMKTLQNNSATMTK
SELDKKQQQIQQEQQNFAEKARILQQKEYTAKDKLSKKFQASFDKAVQTIAKQKNYNVVLTTQALAYVNNVDDISSQVVE
LMNKDSE
>Mature_167_residues
MKKIALSICVLASAFTAAYADTKIAVVNPVEIFNDSDLGSVSVKKLENDLKPDATKLKQEQDNIMQQMKTLQNNSATMTK
SELDKKQQQIQQEQQNFAEKARILQQKEYTAKDKLSKKFQASFDKAVQTIAKQKNYNVVLTTQALAYVNNVDDISSQVVE
LMNKDSE

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18783; Mature: 18783

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIALSICVLASAFTAAYADTKIAVVNPVEIFNDSDLGSVSVKKLENDLKPDATKLKQE
CCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHH
QDNIMQQMKTLQNNSATMTKSELDKKQQQIQQEQQNFAEKARILQQKEYTAKDKLSKKFQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFDKAVQTIAKQKNYNVVLTTQALAYVNNVDDISSQVVELMNKDSE
HHHHHHHHHHHHHCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKIALSICVLASAFTAAYADTKIAVVNPVEIFNDSDLGSVSVKKLENDLKPDATKLKQE
CCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHH
QDNIMQQMKTLQNNSATMTKSELDKKQQQIQQEQQNFAEKARILQQKEYTAKDKLSKKFQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFDKAVQTIAKQKNYNVVLTTQALAYVNNVDDISSQVVELMNKDSE
HHHHHHHHHHHHHCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12886019 [H]