Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054529
Identifier: 89054529
GI number: 89054529
Start: 2043824
End: 2044606
Strand: Direct
Name: 89054529
Synonym: Jann_2038
Alternate gene names: NA
Gene position: 2043824-2044606 (Clockwise)
Preceding gene: 89054528
Following gene: 89054530
Centisome position: 47.33
GC content: 61.3
Gene sequence:
>783_bases ATGCCGCGCAGATTTATTGATATTTCGGTCGCGCTGGAGGCAGGCATCGCGTCTGATCCGCCGATCATGTTGCCGCAGAT TGACTACTTCACCCATGCCCAGACGGCAGGGCAGGTGGCGTCCTTTTTTCCCGGCCTGACGGAGGCCGATTTGCCCGGCG GGGAAGGGTGGGCGGTTGAGACGCTGACGGTCTCGACGCATAACGGCACCCATCTGGACGCGCCTTATCACCATCATTCC ACCATGGACGGGGGCAAGCCCTCTGCAACCATTGATGAAGTGCCGCTGGAGTGGTGCCTGCGCCCCGGCGTCAAGCTGGA TTTCCGGCATCTGCCCGACGGTTACATCGTTCAGGCCGAGGAGGTGGAGGCCGAACTGATCCGCATCGGCCACAATCTGC AACCCCTTGATATCGTGGTGATCAACACGTCTGCCGGTGCCCGGTATGGACAGGAGGATTACCTGAATTCCGGCTGCGGT ATGGGGCGGGAGGCGACGCTTTGGCTGCTGGATCGCGGCGTGCGGGTCACCGGCACCGACGCCTGGTCCTGGGATGCACC CTTTGCCCATACGGCCAAGCGATGGGAACAGGACCGCGATCCGTCGATCATCTGGGAAGGGCATCGCGCGTCGATGACCA CCGGGTATTGCCATATGGAGAAGCTGTCCAACCTCGAAACCCTTCCCGCGACCGGATTCACGATTTCCTGCTTTCCGATC AAGATCAAGCGCGCCTCAGCCGGGTTCACGCGCGCAGTCGCAATTCTGGAGGATGAGACATGA
Upstream 100 bases:
>100_bases TCGGTGCGGCCCCCTTCGCGCTGGCCATGCTGGCGGTGTTGATGCTGGTCGTCGCCTTCCCGGTCATAGCCACCGGATTA ATCCCCTGAAAGGAGCCGTC
Downstream 100 bases:
>100_bases AGATCGGTACGATCCACTTTCAGGGCCGGGACAGGTTGGTGGCCCGCCTGGACGATGACCAGGTTCTCGACCTGCTGGAG GCCTCAGGCGGCGACGTCCA
Product: putative cyclase
Products: NA
Alternate protein names: Cyclase; Polyketide Cyclase; Metal-Dependent Hydrolase; Cyclase Superfamily Protein
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPRRFIDISVALEAGIASDPPIMLPQIDYFTHAQTAGQVASFFPGLTEADLPGGEGWAVETLTVSTHNGTHLDAPYHHHS TMDGGKPSATIDEVPLEWCLRPGVKLDFRHLPDGYIVQAEEVEAELIRIGHNLQPLDIVVINTSAGARYGQEDYLNSGCG MGREATLWLLDRGVRVTGTDAWSWDAPFAHTAKRWEQDRDPSIIWEGHRASMTTGYCHMEKLSNLETLPATGFTISCFPI KIKRASAGFTRAVAILEDET
Sequences:
>Translated_260_residues MPRRFIDISVALEAGIASDPPIMLPQIDYFTHAQTAGQVASFFPGLTEADLPGGEGWAVETLTVSTHNGTHLDAPYHHHS TMDGGKPSATIDEVPLEWCLRPGVKLDFRHLPDGYIVQAEEVEAELIRIGHNLQPLDIVVINTSAGARYGQEDYLNSGCG MGREATLWLLDRGVRVTGTDAWSWDAPFAHTAKRWEQDRDPSIIWEGHRASMTTGYCHMEKLSNLETLPATGFTISCFPI KIKRASAGFTRAVAILEDET >Mature_259_residues PRRFIDISVALEAGIASDPPIMLPQIDYFTHAQTAGQVASFFPGLTEADLPGGEGWAVETLTVSTHNGTHLDAPYHHHST MDGGKPSATIDEVPLEWCLRPGVKLDFRHLPDGYIVQAEEVEAELIRIGHNLQPLDIVVINTSAGARYGQEDYLNSGCGM GREATLWLLDRGVRVTGTDAWSWDAPFAHTAKRWEQDRDPSIIWEGHRASMTTGYCHMEKLSNLETLPATGFTISCFPIK IKRASAGFTRAVAILEDET
Specific function: Unknown
COG id: COG1878
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28611; Mature: 28480
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRFIDISVALEAGIASDPPIMLPQIDYFTHAQTAGQVASFFPGLTEADLPGGEGWAVE CCCEEEEEEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE TLTVSTHNGTHLDAPYHHHSTMDGGKPSATIDEVPLEWCLRPGVKLDFRHLPDGYIVQAE EEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCEEEEEECCCCEEEEHH EVEAELIRIGHNLQPLDIVVINTSAGARYGQEDYLNSGCGMGREATLWLLDRGVRVTGTD HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEEECCEEEECCC AWSWDAPFAHTAKRWEQDRDPSIIWEGHRASMTTGYCHMEKLSNLETLPATGFTISCFPI CCCCCCCHHHHHHHHHCCCCCCEEECCCCCCEEECEEEHHHHCCCCCCCCCCCEEEEEEE KIKRASAGFTRAVAILEDET EEEECCCCCEEEEEEEECCC >Mature Secondary Structure PRRFIDISVALEAGIASDPPIMLPQIDYFTHAQTAGQVASFFPGLTEADLPGGEGWAVE CCEEEEEEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE TLTVSTHNGTHLDAPYHHHSTMDGGKPSATIDEVPLEWCLRPGVKLDFRHLPDGYIVQAE EEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCEEEEEECCCCEEEEHH EVEAELIRIGHNLQPLDIVVINTSAGARYGQEDYLNSGCGMGREATLWLLDRGVRVTGTD HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEEECCEEEECCC AWSWDAPFAHTAKRWEQDRDPSIIWEGHRASMTTGYCHMEKLSNLETLPATGFTISCFPI CCCCCCCHHHHHHHHHCCCCCCEEECCCCCCEEECEEEHHHHCCCCCCCCCCCEEEEEEE KIKRASAGFTRAVAILEDET EEEECCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA