Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
---|---|
Accession | NC_007802 |
Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89054519
Identifier: 89054519
GI number: 89054519
Start: 2033979
End: 2034590
Strand: Direct
Name: 89054519
Synonym: Jann_2028
Alternate gene names: NA
Gene position: 2033979-2034590 (Clockwise)
Preceding gene: 89054518
Following gene: 89054520
Centisome position: 47.1
GC content: 55.39
Gene sequence:
>612_bases ATGACGCAGTACTTCTTCGACATAAGCGGCGTCCTCAACTATCTGAGTTATGGTAGCCGCTTCACCGGCATTCAACGGGT TGTCGTGACACTGGCTGATGCCGCGTGCCAAAAAATACCTGCGGGCCAGGCGTTCATTTCCTATCTCGACCCTAGTAGAG GGCGTTATGTCGCTGTGCCCTACACCAGGTTGGCGGGCGGCCGCCTCACAGACCCGGATCGATTGCGGGCGTCGTTTGGT ATGCGGCCGCCTCTGAGTGATCGACAAAAACCGTCTCTGAGAAAGTATGACGGCAAGTCTATGCGGGCGCTGTATCACGC CGTTCGCTTCGATTTGTATGCAAAGCTTGGCCGTGGCAAATATCAACGGGACAAGCAGACGTCGTCCCGTTCACTATCCT CGTCGGCGCTGTTTAATGGTGGCTGTCCGGACGTACGACCGTTTGAAGAACTGGCGACCGCAAGAGATCACCTGGTTTTG ATGGATTCTGTCTGGGGCAATGAGAAAGCTCTCGCCGCTTTTCAGGCCGCAAAGGACAGCGGTATTGTCGTGCACACTAT GCTGCATGACCTCATTCGGTCGTGGCTCCAGAGGTCGTCAAGGATGACATGA
Upstream 100 bases:
>100_bases TATACCTAACTGAGGCTGCCCACCCCGATCACGGATGACGAACAACGCTAGTGCCCGCTTGGCTCCGGTTATGTCGACGG CAATTGCCAAGGATTAGACA
Downstream 100 bases:
>100_bases TCGCAATCTTTGAGCCATGGCTGAAGGCGTCGCACAGATACACTTCGGCCTATCTGGCGAATTCCCAGTCTACCGGGGAT GACCTCTCTGCATTCTTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MTQYFFDISGVLNYLSYGSRFTGIQRVVVTLADAACQKIPAGQAFISYLDPSRGRYVAVPYTRLAGGRLTDPDRLRASFG MRPPLSDRQKPSLRKYDGKSMRALYHAVRFDLYAKLGRGKYQRDKQTSSRSLSSSALFNGGCPDVRPFEELATARDHLVL MDSVWGNEKALAAFQAAKDSGIVVHTMLHDLIRSWLQRSSRMT
Sequences:
>Translated_203_residues MTQYFFDISGVLNYLSYGSRFTGIQRVVVTLADAACQKIPAGQAFISYLDPSRGRYVAVPYTRLAGGRLTDPDRLRASFG MRPPLSDRQKPSLRKYDGKSMRALYHAVRFDLYAKLGRGKYQRDKQTSSRSLSSSALFNGGCPDVRPFEELATARDHLVL MDSVWGNEKALAAFQAAKDSGIVVHTMLHDLIRSWLQRSSRMT >Mature_202_residues TQYFFDISGVLNYLSYGSRFTGIQRVVVTLADAACQKIPAGQAFISYLDPSRGRYVAVPYTRLAGGRLTDPDRLRASFGM RPPLSDRQKPSLRKYDGKSMRALYHAVRFDLYAKLGRGKYQRDKQTSSRSLSSSALFNGGCPDVRPFEELATARDHLVLM DSVWGNEKALAAFQAAKDSGIVVHTMLHDLIRSWLQRSSRMT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22793; Mature: 22662
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQYFFDISGVLNYLSYGSRFTGIQRVVVTLADAACQKIPAGQAFISYLDPSRGRYVAVP CCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEC YTRLAGGRLTDPDRLRASFGMRPPLSDRQKPSLRKYDGKSMRALYHAVRFDLYAKLGRGK HHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCC YQRDKQTSSRSLSSSALFNGGCPDVRPFEELATARDHLVLMDSVWGNEKALAAFQAAKDS CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEEECCCCCHHHHHHHHHHCCC GIVVHTMLHDLIRSWLQRSSRMT CEEHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TQYFFDISGVLNYLSYGSRFTGIQRVVVTLADAACQKIPAGQAFISYLDPSRGRYVAVP CCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEC YTRLAGGRLTDPDRLRASFGMRPPLSDRQKPSLRKYDGKSMRALYHAVRFDLYAKLGRGK HHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCC YQRDKQTSSRSLSSSALFNGGCPDVRPFEELATARDHLVLMDSVWGNEKALAAFQAAKDS CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEEECCCCCHHHHHHHHHHCCC GIVVHTMLHDLIRSWLQRSSRMT CEEHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA