Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054501
Identifier: 89054501
GI number: 89054501
Start: 2017050
End: 2017706
Strand: Reverse
Name: 89054501
Synonym: Jann_2010
Alternate gene names: NA
Gene position: 2017706-2017050 (Counterclockwise)
Preceding gene: 89054502
Following gene: 89054498
Centisome position: 46.73
GC content: 56.16
Gene sequence:
>657_bases ATGAATAGATCGCTTTCCGGGTTTGACCCGATCCCGCAGCATAGGGGCCTGTGGTCTGCTCAAAAGGGCACATTGCGATG CACCGCTTTGCAGCTGCGCGACGGCTCACTCTGCCTCTACAGTCCGGTTCTGGGCTTGGGGGATGCAGCCCGAACGAGCC TCGCAAAGCTTGGCAAAGTCGCATTCCTGCTCGCACCAAATCACTATCACAACAAAGGCCTTTCGGAATACGCAAAGGCC TTTGCGGGTGCCGCGCTCGTGTGTTCCGAACGGGCGCGGCCACGCCTTGAGCAACAGACTGGCCTGTCATTTGAAGGGCT GCAACCGCTGAACGACCTGCTGCCGGATGGTGCAAAGATCCTTGAGCCACAGGGGCTGAAGACAGGCGAAGTCTGGTTAA CGCGTGTGACAAGTGAAGACACGGTTTGGGTTGTATGTGATGCCTTCAAGGGGCCTTCGGGAAAAGAGGGTGACATTAGT ACGCAGATTGAACTGTTGGGCACCTTCCCGACCTACGGAATTGAGGACAAAGGGACATATTCGGCGTTTGTCAAATCCAC GTTGACCGACCTACCGCCAACAACAATAGTCCCGTGTCACGGTTCGATTGTCCGCAGTGACCACCTGGCTGCGGATATTG CGTCGTTGACAGGTTGA
Upstream 100 bases:
>100_bases CCGGCGTGCTCGCCTTGGCCTTGCCGTTGGCGTGGTTGGAAATGGTCGTAGCCGCTTTGATAGTGTGGTGGTTCACGGCG AAAGACGGAACCGATCTTTC
Downstream 100 bases:
>100_bases GTAGGCCAACATCAGAGTAGGTCGCAGAATTTGCTGGTATGGGCTCTTCCCACACCTTTGCAGCGCGGACTACGGGTGAC ATCATTGGGAAAGATCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MNRSLSGFDPIPQHRGLWSAQKGTLRCTALQLRDGSLCLYSPVLGLGDAARTSLAKLGKVAFLLAPNHYHNKGLSEYAKA FAGAALVCSERARPRLEQQTGLSFEGLQPLNDLLPDGAKILEPQGLKTGEVWLTRVTSEDTVWVVCDAFKGPSGKEGDIS TQIELLGTFPTYGIEDKGTYSAFVKSTLTDLPPTTIVPCHGSIVRSDHLAADIASLTG
Sequences:
>Translated_218_residues MNRSLSGFDPIPQHRGLWSAQKGTLRCTALQLRDGSLCLYSPVLGLGDAARTSLAKLGKVAFLLAPNHYHNKGLSEYAKA FAGAALVCSERARPRLEQQTGLSFEGLQPLNDLLPDGAKILEPQGLKTGEVWLTRVTSEDTVWVVCDAFKGPSGKEGDIS TQIELLGTFPTYGIEDKGTYSAFVKSTLTDLPPTTIVPCHGSIVRSDHLAADIASLTG >Mature_218_residues MNRSLSGFDPIPQHRGLWSAQKGTLRCTALQLRDGSLCLYSPVLGLGDAARTSLAKLGKVAFLLAPNHYHNKGLSEYAKA FAGAALVCSERARPRLEQQTGLSFEGLQPLNDLLPDGAKILEPQGLKTGEVWLTRVTSEDTVWVVCDAFKGPSGKEGDIS TQIELLGTFPTYGIEDKGTYSAFVKSTLTDLPPTTIVPCHGSIVRSDHLAADIASLTG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23339; Mature: 23339
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRSLSGFDPIPQHRGLWSAQKGTLRCTALQLRDGSLCLYSPVLGLGDAARTSLAKLGKV CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCE AFLLAPNHYHNKGLSEYAKAFAGAALVCSERARPRLEQQTGLSFEGLQPLNDLLPDGAKI EEEECCCCCCCCCHHHHHHHHHCHHEEECCCCCCCHHHHCCCCCCCCCHHHHHCCCCCEE LEPQGLKTGEVWLTRVTSEDTVWVVCDAFKGPSGKEGDISTQIELLGTFPTYGIEDKGTY ECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH SAFVKSTLTDLPPTTIVPCHGSIVRSDHLAADIASLTG HHHHHHHHHCCCCCEEEECCCCEEECHHHHHHHHHHCC >Mature Secondary Structure MNRSLSGFDPIPQHRGLWSAQKGTLRCTALQLRDGSLCLYSPVLGLGDAARTSLAKLGKV CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCE AFLLAPNHYHNKGLSEYAKAFAGAALVCSERARPRLEQQTGLSFEGLQPLNDLLPDGAKI EEEECCCCCCCCCHHHHHHHHHCHHEEECCCCCCCHHHHCCCCCCCCCHHHHHCCCCCEE LEPQGLKTGEVWLTRVTSEDTVWVVCDAFKGPSGKEGDISTQIELLGTFPTYGIEDKGTY ECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH SAFVKSTLTDLPPTTIVPCHGSIVRSDHLAADIASLTG HHHHHHHHHCCCCCEEEECCCCEEECHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA