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The map label for this gene is ydeE [H]

Identifier: 89054443

GI number: 89054443

Start: 1944951

End: 1945766

Strand: Reverse

Name: ydeE [H]

Synonym: Jann_1952

Alternate gene names: 89054443

Gene position: 1945766-1944951 (Counterclockwise)

Preceding gene: 89054447

Following gene: 89054436

Centisome position: 45.06

GC content: 61.03

Gene sequence:

>816_bases
ATGCCCCTGCTCGACAAGATGATCTGGCATATCGAGACACAGCTGGATGCGCCTTTGACGCTGGAGACCTTGGCCGACCG
CTGCGCCGTCAACGTGCATCACATGTGCCGGGCGTTTCAGTTCAGCACCGGGCTGTCGGTGATGGCCTATGTGCGGGCAA
GGCGGTTGAGCCGGGCGGCCCATGTTCTGGCGGACGGTGAGGCCGACATCCTCACCATGGCGCTGGAGGCCGGATACGGA
TCCCATGAAGCGTTCACGCGGGCCTTTCGCGCCTATCTGGGGGTCCTGCCCTCACAGGTGAAAGAGGCCTGCGATCTTTC
CAACCTCAGTTTGATGGAGCCTTTAAAGATGGACAATTCAAGGATCATAGACGTGGCGAAACCCGAGATCAGGACCCGCG
AGGCGTTTCGCGTGGTGGGGTTTGGGGCGGATGTCACAGGCTTTGACATCAGCGCCATTCCCGGCCTGTGGCAAAGATTT
GCGGCACAATATCAGGAGCTTGGAGCCGATGGCGTAACCTATGGGGTCAGCTATGATATCGGGGAGGATGGCGACTTTCG
CTACATCGCGGGATTGGAATGGCCCGACGTGCCCGACGGAATGGTGACGGTGGATCTCCCCGCCGCGCGCTATGCGGTCT
TCACCCATGATGGCCATATCGGCGATCTGCCCAAGATGATCTACACGATCTGGAACAAGGCCCTGCCCGGCTCGGGTCTG
GAGCCCGCCACAACGCCGGAGTTTGAGCTGTACGACCACCGGTTCAACGCCGTGACGGGGCTTGGCGTCGTGGAGCACTG
GGTGCCGCTGGTCTGA

Upstream 100 bases:

>100_bases
GTATCATGTTAGCGCTAACATGTCCAGAGGTCACATGCGATCAAGCGCGGGGGTGTTAGGAGTGCCAGGGTAGCGCCACG
CGGATGATTGGAGATCCTGA

Downstream 100 bases:

>100_bases
TTGGCCGGGGTCAGGGGGGATCGGCGCGGATGCCGGCCCCTCCCCCTCCGCAAAGGGCCGATCTGCTTACCGTGAGGCGG
TCCCGGTCGAATGGTCCTGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPLLDKMIWHIETQLDAPLTLETLADRCAVNVHHMCRAFQFSTGLSVMAYVRARRLSRAAHVLADGEADILTMALEAGYG
SHEAFTRAFRAYLGVLPSQVKEACDLSNLSLMEPLKMDNSRIIDVAKPEIRTREAFRVVGFGADVTGFDISAIPGLWQRF
AAQYQELGADGVTYGVSYDIGEDGDFRYIAGLEWPDVPDGMVTVDLPAARYAVFTHDGHIGDLPKMIYTIWNKALPGSGL
EPATTPEFELYDHRFNAVTGLGVVEHWVPLV

Sequences:

>Translated_271_residues
MPLLDKMIWHIETQLDAPLTLETLADRCAVNVHHMCRAFQFSTGLSVMAYVRARRLSRAAHVLADGEADILTMALEAGYG
SHEAFTRAFRAYLGVLPSQVKEACDLSNLSLMEPLKMDNSRIIDVAKPEIRTREAFRVVGFGADVTGFDISAIPGLWQRF
AAQYQELGADGVTYGVSYDIGEDGDFRYIAGLEWPDVPDGMVTVDLPAARYAVFTHDGHIGDLPKMIYTIWNKALPGSGL
EPATTPEFELYDHRFNAVTGLGVVEHWVPLV
>Mature_270_residues
PLLDKMIWHIETQLDAPLTLETLADRCAVNVHHMCRAFQFSTGLSVMAYVRARRLSRAAHVLADGEADILTMALEAGYGS
HEAFTRAFRAYLGVLPSQVKEACDLSNLSLMEPLKMDNSRIIDVAKPEIRTREAFRVVGFGADVTGFDISAIPGLWQRFA
AQYQELGADGVTYGVSYDIGEDGDFRYIAGLEWPDVPDGMVTVDLPAARYAVFTHDGHIGDLPKMIYTIWNKALPGSGLE
PATTPEFELYDHRFNAVTGLGVVEHWVPLV

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=265, Percent_Identity=26.7924528301887, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081928, Length=110, Percent_Identity=30.9090909090909, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29976; Mature: 29844

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLDKMIWHIETQLDAPLTLETLADRCAVNVHHMCRAFQFSTGLSVMAYVRARRLSRAA
CCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
HVLADGEADILTMALEAGYGSHEAFTRAFRAYLGVLPSQVKEACDLSNLSLMEPLKMDNS
HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCHHCCCCC
RIIDVAKPEIRTREAFRVVGFGADVTGFDISAIPGLWQRFAAQYQELGADGVTYGVSYDI
EEEEECCCCHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
GEDGDFRYIAGLEWPDVPDGMVTVDLPAARYAVFTHDGHIGDLPKMIYTIWNKALPGSGL
CCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
EPATTPEFELYDHRFNAVTGLGVVEHWVPLV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLLDKMIWHIETQLDAPLTLETLADRCAVNVHHMCRAFQFSTGLSVMAYVRARRLSRAA
CHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
HVLADGEADILTMALEAGYGSHEAFTRAFRAYLGVLPSQVKEACDLSNLSLMEPLKMDNS
HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCHHCCCCC
RIIDVAKPEIRTREAFRVVGFGADVTGFDISAIPGLWQRFAAQYQELGADGVTYGVSYDI
EEEEECCCCHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
GEDGDFRYIAGLEWPDVPDGMVTVDLPAARYAVFTHDGHIGDLPKMIYTIWNKALPGSGL
CCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
EPATTPEFELYDHRFNAVTGLGVVEHWVPLV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]