Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054425
Identifier: 89054425
GI number: 89054425
Start: 1923777
End: 1925252
Strand: Direct
Name: 89054425
Synonym: Jann_1934
Alternate gene names: NA
Gene position: 1923777-1925252 (Clockwise)
Preceding gene: 89054424
Following gene: 89054426
Centisome position: 44.55
GC content: 66.94
Gene sequence:
>1476_bases ATGGGCCAGGACAACGGGCAGTATTGGGACCACGAAGCCGGGGACCAGACGCAAGCGTCTGAACCTGCGCTTCAAGACGT GTCTATCCCTGAGACGCCCCCTGCATTCGATGGCTACGACCTGCTGGATGTGCCTTTGGGCGATCTGATGCGCGGGGAAC GGGCGACCCTCGGCAAGTCTCTTCTGGATGTGGAGCGGGAGCTTCGCATTCGCGCCACCTACATCGCCGCGATTGAAAAC GCCGATGTCGGGGCCTTCCAATCCCAGGGCTTCATTGCCGGTTACGTCCGCTCCTACGCGCGCTACCTTGGCATTGACCC CGAATGGACCTTCCGCCGCTTCTGCGATGAGACGGGGTTTCGGGGCATCCATGGCAGCGCGACCCATCAGGCCTCCGACG TCAAGCGCTCGGTCTCCCGTGCGCCGCGCCGGGTTGATCCCAATGAGGTCATGGTCTCGACCCGTATTTCCTATGCGCCA ACGCGCCACAGCCTGATGTCGCGGGTCGAACCGGGTGCGCTCGGGTCGATCGCCGTCGTCCTCGTGCTCGCGATGGGCAT CGGCTACGGGGCCTGGGCGATCCTGCATGACATCCAGCGCCTCCAGATTGCCCCGATTGATGAGGCCCCCGCCGTGCCGC TGGCGCAGCTTGATCCGCTGGTGGGCGTCACCTCCGGCTCTAACGGGTCCACCGGCACCAACGGATTTGACGGCGACCAT ACATTCGACATCGCCATGCCCGGCCCGGAAACGGGCAATGCGCTCTACCGGCCCCAGGCCCTTGAAGCGCCGGTTCTGAC GCCGCGCGATGGTGCGCTCGGTACACTCAACCCCGATGAGGTCGGCACCCTGTCGGGCGTCACGCAAACCGCGACCGCTG CCCCCGCCGCGACCGCGCCTGCCACGCCCCCCGTTGCGGATGGCTCCGTTCAGGTCACCGCCGGTCGCGCCGATGAGGTG ATGATTTTCGCCACCCGTCCCACCTGGGTCCGCGTCACGTCCGCCGATGGCTCCACCATCTACGAGGCGACGCTGAATGC GGGCGACAGCTACGTGGTGCCTGATACCGATGGCGCGCCGCGCCTGCGATCAGGCAATGCGGGCTCTCTCTACTTCGCCG TGAACGGCGTGGCCCTTGGCCCCGCAGGCCCCGGTGCCACCATCGTGCGCGATGTGGAGCTGACCGCCGATGCCGTCACC GCCACCTATCAGATGGCCGATACCGAGGCGGATCCCGACCTCACTCAGGTCGCCTCCCTGATGTTTGACGGGGCTGATGT GCCCGATGTGGCCCCCGTCGTGCCGGACCAGCCCGCGGCCACCGCCTACAACCCCACGGATCCCGCGCCGGCACCCCTGA CGCTATTCCCGGACATCCCCTCTGACGTCGCCGCTGCGATCATCGCCAGCAATGCGCTGCCCGTCTCCGTTCAGTCGCCC ACAACCGACGATCCGCGCCCGATCCCACGCCCCTGA
Upstream 100 bases:
>100_bases AGGCCCTTTGGGAATCATCTGCGTTGGGGTAACATCTAGGGACACTTGGGCGGACAACCACTAGCAATAGTGGGCCCACC ATAGAATCGGGGCAGGCCGC
Downstream 100 bases:
>100_bases CGCCGTCCGTGCCCCGCGCTACTCGCGCCCCTGACGCAGCCCGTGATTGCACCGCCCGTCCGCCGCGCCTCTCCAATACG CCCCGCCTGCGCGTCCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MGQDNGQYWDHEAGDQTQASEPALQDVSIPETPPAFDGYDLLDVPLGDLMRGERATLGKSLLDVERELRIRATYIAAIEN ADVGAFQSQGFIAGYVRSYARYLGIDPEWTFRRFCDETGFRGIHGSATHQASDVKRSVSRAPRRVDPNEVMVSTRISYAP TRHSLMSRVEPGALGSIAVVLVLAMGIGYGAWAILHDIQRLQIAPIDEAPAVPLAQLDPLVGVTSGSNGSTGTNGFDGDH TFDIAMPGPETGNALYRPQALEAPVLTPRDGALGTLNPDEVGTLSGVTQTATAAPAATAPATPPVADGSVQVTAGRADEV MIFATRPTWVRVTSADGSTIYEATLNAGDSYVVPDTDGAPRLRSGNAGSLYFAVNGVALGPAGPGATIVRDVELTADAVT ATYQMADTEADPDLTQVASLMFDGADVPDVAPVVPDQPAATAYNPTDPAPAPLTLFPDIPSDVAAAIIASNALPVSVQSP TTDDPRPIPRP
Sequences:
>Translated_491_residues MGQDNGQYWDHEAGDQTQASEPALQDVSIPETPPAFDGYDLLDVPLGDLMRGERATLGKSLLDVERELRIRATYIAAIEN ADVGAFQSQGFIAGYVRSYARYLGIDPEWTFRRFCDETGFRGIHGSATHQASDVKRSVSRAPRRVDPNEVMVSTRISYAP TRHSLMSRVEPGALGSIAVVLVLAMGIGYGAWAILHDIQRLQIAPIDEAPAVPLAQLDPLVGVTSGSNGSTGTNGFDGDH TFDIAMPGPETGNALYRPQALEAPVLTPRDGALGTLNPDEVGTLSGVTQTATAAPAATAPATPPVADGSVQVTAGRADEV MIFATRPTWVRVTSADGSTIYEATLNAGDSYVVPDTDGAPRLRSGNAGSLYFAVNGVALGPAGPGATIVRDVELTADAVT ATYQMADTEADPDLTQVASLMFDGADVPDVAPVVPDQPAATAYNPTDPAPAPLTLFPDIPSDVAAAIIASNALPVSVQSP TTDDPRPIPRP >Mature_490_residues GQDNGQYWDHEAGDQTQASEPALQDVSIPETPPAFDGYDLLDVPLGDLMRGERATLGKSLLDVERELRIRATYIAAIENA DVGAFQSQGFIAGYVRSYARYLGIDPEWTFRRFCDETGFRGIHGSATHQASDVKRSVSRAPRRVDPNEVMVSTRISYAPT RHSLMSRVEPGALGSIAVVLVLAMGIGYGAWAILHDIQRLQIAPIDEAPAVPLAQLDPLVGVTSGSNGSTGTNGFDGDHT FDIAMPGPETGNALYRPQALEAPVLTPRDGALGTLNPDEVGTLSGVTQTATAAPAATAPATPPVADGSVQVTAGRADEVM IFATRPTWVRVTSADGSTIYEATLNAGDSYVVPDTDGAPRLRSGNAGSLYFAVNGVALGPAGPGATIVRDVELTADAVTA TYQMADTEADPDLTQVASLMFDGADVPDVAPVVPDQPAATAYNPTDPAPAPLTLFPDIPSDVAAAIIASNALPVSVQSPT TDDPRPIPRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51351; Mature: 51219
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQDNGQYWDHEAGDQTQASEPALQDVSIPETPPAFDGYDLLDVPLGDLMRGERATLGKS CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCHHHHHCCCHHHHHHH LLDVERELRIRATYIAAIENADVGAFQSQGFIAGYVRSYARYLGIDPEWTFRRFCDETGF HHHHHHHHEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC RGIHGSATHQASDVKRSVSRAPRRVDPNEVMVSTRISYAPTRHSLMSRVEPGALGSIAVV CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHHH LVLAMGIGYGAWAILHDIQRLQIAPIDEAPAVPLAQLDPLVGVTSGSNGSTGTNGFDGDH HHHHHHCCHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCE TFDIAMPGPETGNALYRPQALEAPVLTPRDGALGTLNPDEVGTLSGVTQTATAAPAATAP EEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCC ATPPVADGSVQVTAGRADEVMIFATRPTWVRVTSADGSTIYEATLNAGDSYVVPDTDGAP CCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCC RLRSGNAGSLYFAVNGVALGPAGPGATIVRDVELTADAVTATYQMADTEADPDLTQVASL CCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECHHHHEEEEEECCCCCCCCHHHHHHH MFDGADVPDVAPVVPDQPAATAYNPTDPAPAPLTLFPDIPSDVAAAIIASNALPVSVQSP HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCC TTDDPRPIPRP CCCCCCCCCCC >Mature Secondary Structure GQDNGQYWDHEAGDQTQASEPALQDVSIPETPPAFDGYDLLDVPLGDLMRGERATLGKS CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCHHHHHCCCHHHHHHH LLDVERELRIRATYIAAIENADVGAFQSQGFIAGYVRSYARYLGIDPEWTFRRFCDETGF HHHHHHHHEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC RGIHGSATHQASDVKRSVSRAPRRVDPNEVMVSTRISYAPTRHSLMSRVEPGALGSIAVV CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHHH LVLAMGIGYGAWAILHDIQRLQIAPIDEAPAVPLAQLDPLVGVTSGSNGSTGTNGFDGDH HHHHHHCCHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCE TFDIAMPGPETGNALYRPQALEAPVLTPRDGALGTLNPDEVGTLSGVTQTATAAPAATAP EEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCC ATPPVADGSVQVTAGRADEVMIFATRPTWVRVTSADGSTIYEATLNAGDSYVVPDTDGAP CCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCC RLRSGNAGSLYFAVNGVALGPAGPGATIVRDVELTADAVTATYQMADTEADPDLTQVASL CCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECHHHHEEEEEECCCCCCCCHHHHHHH MFDGADVPDVAPVVPDQPAATAYNPTDPAPAPLTLFPDIPSDVAAAIIASNALPVSVQSP HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCC TTDDPRPIPRP CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA