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The map label for this gene is rpoE [C]

Identifier: 89054381

GI number: 89054381

Start: 1879379

End: 1879963

Strand: Reverse

Name: rpoE [C]

Synonym: Jann_1890

Alternate gene names: 89054381

Gene position: 1879963-1879379 (Counterclockwise)

Preceding gene: 89054383

Following gene: 89054380

Centisome position: 43.54

GC content: 68.72

Gene sequence:

>585_bases
ATGTCCCTTCAATCTAGCCCCGCCCCGCAGCTGCCCCTGGAAGAAGACGCCTCCGGCGCCCTGCCCCACACGCGTATCTT
TACCGCACTTCTGACCGATCTGCGACGCTCTGCCCGGCGGCTGGCACGCACAGGCGATGACGCCGATGATCTGGTCCAGG
ACACGCTTTTGCGGGTCTGGTCCCGCATGGCGATGTCGTTTGAAGGGGGCACCGATGCGACCCCCATCGACGATCTGCGC
GCCTATGCCTTCGCCACGCTGCGCCACCGCGCGTTCCGGCGCGGGTCAATCGCCACACCCGCAGATGTGGAGCCTGAGGA
CATCGTCGCGCCCCGCGGATCAGACGGCGTCACGCGGTTGGCCTGCGCCGAAGCCTTGGAGGCGCTCGCTGCCCTGTCCG
AGGATCAGCAGGTGCTGCTCAAACTGCGCGCCATGGATGGCCTCAGCTACGCGGAGATCGCCGAGAAGACGGGCCTGCCG
ATGGGCACCGTCACGTCCCGGCTGGCGCGGGGCCGCGCGGCCATGCGGGAGGCATTGGACCTGCCGCCCGGCGCGCCGGT
GACGGACCTTCTTGGGGGAGAATGA

Upstream 100 bases:

>100_bases
ATGGGGGGATTGGACGGCCAAGCCGCGCGCCGCTTGCCGGGCCGAGGCTTGTAAGCTCAGCCTCAAGGCGCTCACGGAAA
CCCCTGTCGTTCGAGGCCCC

Downstream 100 bases:

>100_bases
AAGGCGGACCATGTCTGTCCGCGCCAAGGTTTTGTCGCTCTGCGGCAAGATTTCGAGGCCGCGCGTGCCCAAGCTACTCC
TGTCCCCGACGACAGACAGC

Product: FecI-like sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Sigma Factor PrtI; RNA Polymerase Sigma-24 Subunit Ecf Subfamily

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSLQSSPAPQLPLEEDASGALPHTRIFTALLTDLRRSARRLARTGDDADDLVQDTLLRVWSRMAMSFEGGTDATPIDDLR
AYAFATLRHRAFRRGSIATPADVEPEDIVAPRGSDGVTRLACAEALEALAALSEDQQVLLKLRAMDGLSYAEIAEKTGLP
MGTVTSRLARGRAAMREALDLPPGAPVTDLLGGE

Sequences:

>Translated_194_residues
MSLQSSPAPQLPLEEDASGALPHTRIFTALLTDLRRSARRLARTGDDADDLVQDTLLRVWSRMAMSFEGGTDATPIDDLR
AYAFATLRHRAFRRGSIATPADVEPEDIVAPRGSDGVTRLACAEALEALAALSEDQQVLLKLRAMDGLSYAEIAEKTGLP
MGTVTSRLARGRAAMREALDLPPGAPVTDLLGGE
>Mature_193_residues
SLQSSPAPQLPLEEDASGALPHTRIFTALLTDLRRSARRLARTGDDADDLVQDTLLRVWSRMAMSFEGGTDATPIDDLRA
YAFATLRHRAFRRGSIATPADVEPEDIVAPRGSDGVTRLACAEALEALAALSEDQQVLLKLRAMDGLSYAEIAEKTGLPM
GTVTSRLARGRAAMREALDLPPGAPVTDLLGGE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20782; Mature: 20651

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQSSPAPQLPLEEDASGALPHTRIFTALLTDLRRSARRLARTGDDADDLVQDTLLRVW
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SRMAMSFEGGTDATPIDDLRAYAFATLRHRAFRRGSIATPADVEPEDIVAPRGSDGVTRL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHH
ACAEALEALAALSEDQQVLLKLRAMDGLSYAEIAEKTGLPMGTVTSRLARGRAAMREALD
HHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
LPPGAPVTDLLGGE
CCCCCCHHHHCCCC
>Mature Secondary Structure 
SLQSSPAPQLPLEEDASGALPHTRIFTALLTDLRRSARRLARTGDDADDLVQDTLLRVW
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SRMAMSFEGGTDATPIDDLRAYAFATLRHRAFRRGSIATPADVEPEDIVAPRGSDGVTRL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHH
ACAEALEALAALSEDQQVLLKLRAMDGLSYAEIAEKTGLPMGTVTSRLARGRAAMREALD
HHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
LPPGAPVTDLLGGE
CCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA