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The map label for this gene is ydiU [C]

Identifier: 89054293

GI number: 89054293

Start: 1791111

End: 1792553

Strand: Reverse

Name: ydiU [C]

Synonym: Jann_1802

Alternate gene names: 89054293

Gene position: 1792553-1791111 (Counterclockwise)

Preceding gene: 89054294

Following gene: 89054291

Centisome position: 41.51

GC content: 64.45

Gene sequence:

>1443_bases
ATGCCAGACGCCTTCCCGTTCGATAACACCTATGCCAGCCTGCCCGATCGCTTCTTCACGCGCATGTCCCCCAAACCCGT
GGCGGAGCCCGGATTGATCGCGGTCAATCGCCCCCTGGCAGAGCGGCTTGGCATCACGTTGGGTGAAAGCGACGCAGAGC
TGGCGCAGTTATTTGCGGGCAACGTTGTACCCATGGGCGCGGCCCCCTTGGCGCAGGTCTATGCAGGCCACCAGTTCGGC
GGCTGGTCGCAGCAATTGGGCGACGGGCGCGCCGTGATGTTAGGCGAGGTGGTGGCCCCGGACGGCGCACGTTTTGATGT
GCAGTTGAAGGGCGCGGGCCAGACGCCTTATTCCCGAATGGGCGACGGGCGCGCGTGGCTGGGTCCGGTCCTGCGCGAAT
ATATCGTGTCAGAGGCGATGGCCGCCTTGGGCATCCCCACAACGCGGGCCTTAGCGGCAGTGACAACCGGAGAAATTGTG
TTGCGCGAGGCCCGGATGCCCGGCGCGGTTCTGACGCGCGTGGCGGCGTCGCACATCCGTGTCGGCACATTTCAATACTT
CGCAGCCCGCCAGGACGTGGACGCCTTGCAAGCGCTTTTGGACCACACCATCGCGCGGCATTATCCGGACGTCGACGGCC
CCTCCGGCCTGCTGGACGCGGCGTTGCAGGCGCAGGCCGACCTGATCGCAAAGTGGATGGGCGTGGGCTTCATCCATGGC
GTGATGAATACCGACAACATGACCCTTTCGGGCGAGACCATCGACTACGGCCCCTGCGCGTTCATGGATACGTATGAGGC
GAACAAGGTCTTCTCCTCCATCGACCAATTCGGGCGCTATGCCTATGCGCAGCAACCGCAGATCGCGGCGTGGAACCTGG
CCCAACTGGCCACGGCGCTTCTGCCCTTGATGCCGGACCGGGACGCCGCGATTGAAGAGTTCACAGAAGCCGTCAACGGT
TTTGCCGCCCGGTTTGACACTGCCTGGCATGGGGTGTTGCGGGCCAAGCTGGGGTTGGTCAGTGAACAGGAGGGGGACGC
GCAACTGGCGTTTGACCTGCTCAACCGGATGGAACAGGGCGGCGGTGATTTCACGCAAGTGTTCCGCGCCCTGTCCGGCC
CCGAGCCGGAGCGCGCCGCAGAGGCCTTCGCCGCGCCAGCCGTCCTCGCCCCCTGGCTGAAGGCGTGGCGCGCGCGACTT
GCACGGGACAATGTGGCCAAGGCGGCCCGTATTGCATCCATGCAAGCAGACAACCCGGCCCTGATCCCGCGCAATCACCG
GATCGAAGAGGTCATTCAGGCTGCGGTAAAGGGGGATTTTGCCCCGTTTGAGCGGTTGACCACGGCGTTGCAAGATCCCT
TTACAGACCGCCCGGAGTTCGCAGATCTGCAAGCCACACCGGCACGCTCGGAAGCCGTCACCCAAACCTTCTGCGGCACC
TAA

Upstream 100 bases:

>100_bases
GGCCCGTGCTGATCGAAATCCAGTTCACCTCGCCCTGAACCTTCCGCCCTAGGCAACCCCGGCCCAAACCCCTACATCAG
GCAAAACGCCGGAGACCCCC

Downstream 100 bases:

>100_bases
ACGGCGCGAGGGCCTCCGACGCACCGGATCTGGGCAGGGGTCATCCGCTCCGGGCGGGCCGGTTGATCAGCAGCAGCCCC
AAACACACCAGCGTCAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MPDAFPFDNTYASLPDRFFTRMSPKPVAEPGLIAVNRPLAERLGITLGESDAELAQLFAGNVVPMGAAPLAQVYAGHQFG
GWSQQLGDGRAVMLGEVVAPDGARFDVQLKGAGQTPYSRMGDGRAWLGPVLREYIVSEAMAALGIPTTRALAAVTTGEIV
LREARMPGAVLTRVAASHIRVGTFQYFAARQDVDALQALLDHTIARHYPDVDGPSGLLDAALQAQADLIAKWMGVGFIHG
VMNTDNMTLSGETIDYGPCAFMDTYEANKVFSSIDQFGRYAYAQQPQIAAWNLAQLATALLPLMPDRDAAIEEFTEAVNG
FAARFDTAWHGVLRAKLGLVSEQEGDAQLAFDLLNRMEQGGGDFTQVFRALSGPEPERAAEAFAAPAVLAPWLKAWRARL
ARDNVAKAARIASMQADNPALIPRNHRIEEVIQAAVKGDFAPFERLTTALQDPFTDRPEFADLQATPARSEAVTQTFCGT

Sequences:

>Translated_480_residues
MPDAFPFDNTYASLPDRFFTRMSPKPVAEPGLIAVNRPLAERLGITLGESDAELAQLFAGNVVPMGAAPLAQVYAGHQFG
GWSQQLGDGRAVMLGEVVAPDGARFDVQLKGAGQTPYSRMGDGRAWLGPVLREYIVSEAMAALGIPTTRALAAVTTGEIV
LREARMPGAVLTRVAASHIRVGTFQYFAARQDVDALQALLDHTIARHYPDVDGPSGLLDAALQAQADLIAKWMGVGFIHG
VMNTDNMTLSGETIDYGPCAFMDTYEANKVFSSIDQFGRYAYAQQPQIAAWNLAQLATALLPLMPDRDAAIEEFTEAVNG
FAARFDTAWHGVLRAKLGLVSEQEGDAQLAFDLLNRMEQGGGDFTQVFRALSGPEPERAAEAFAAPAVLAPWLKAWRARL
ARDNVAKAARIASMQADNPALIPRNHRIEEVIQAAVKGDFAPFERLTTALQDPFTDRPEFADLQATPARSEAVTQTFCGT
>Mature_479_residues
PDAFPFDNTYASLPDRFFTRMSPKPVAEPGLIAVNRPLAERLGITLGESDAELAQLFAGNVVPMGAAPLAQVYAGHQFGG
WSQQLGDGRAVMLGEVVAPDGARFDVQLKGAGQTPYSRMGDGRAWLGPVLREYIVSEAMAALGIPTTRALAAVTTGEIVL
REARMPGAVLTRVAASHIRVGTFQYFAARQDVDALQALLDHTIARHYPDVDGPSGLLDAALQAQADLIAKWMGVGFIHGV
MNTDNMTLSGETIDYGPCAFMDTYEANKVFSSIDQFGRYAYAQQPQIAAWNLAQLATALLPLMPDRDAAIEEFTEAVNGF
AARFDTAWHGVLRAKLGLVSEQEGDAQLAFDLLNRMEQGGGDFTQVFRALSGPEPERAAEAFAAPAVLAPWLKAWRARLA
RDNVAKAARIASMQADNPALIPRNHRIEEVIQAAVKGDFAPFERLTTALQDPFTDRPEFADLQATPARSEAVTQTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=394, Percent_Identity=39.5939086294416, Blast_Score=260, Evalue=3e-69,
Organism=Escherichia coli, GI1787999, Length=452, Percent_Identity=42.9203539823009, Blast_Score=337, Evalue=1e-93,
Organism=Saccharomyces cerevisiae, GI6325034, Length=336, Percent_Identity=33.0357142857143, Blast_Score=166, Evalue=6e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1802_JANSC (Q28RE3)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_509744.1
- STRING:   Q28RE3
- GeneID:   3934251
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_1802
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- PhylomeDB:   Q28RE3
- BioCyc:   JSP290400:JANN_1802-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 51792; Mature: 51661

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDAFPFDNTYASLPDRFFTRMSPKPVAEPGLIAVNRPLAERLGITLGESDAELAQLFAG
CCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCHHHHHHCCCCCCCHHHHHHHHCC
NVVPMGAAPLAQVYAGHQFGGWSQQLGDGRAVMLGEVVAPDGARFDVQLKGAGQTPYSRM
CCCCCCCHHHHHHHCCCCCCCHHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHC
GDGRAWLGPVLREYIVSEAMAALGIPTTRALAAVTTGEIVLREARMPGAVLTRVAASHIR
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VGTFQYFAARQDVDALQALLDHTIARHYPDVDGPSGLLDAALQAQADLIAKWMGVGFIHG
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VMNTDNMTLSGETIDYGPCAFMDTYEANKVFSSIDQFGRYAYAQQPQIAAWNLAQLATAL
HCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LPLMPDRDAAIEEFTEAVNGFAARFDTAWHGVLRAKLGLVSEQEGDAQLAFDLLNRMEQG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
GGDFTQVFRALSGPEPERAAEAFAAPAVLAPWLKAWRARLARDNVAKAARIASMQADNPA
CCHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LIPRNHRIEEVIQAAVKGDFAPFERLTTALQDPFTDRPEFADLQATPARSEAVTQTFCGT
CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PDAFPFDNTYASLPDRFFTRMSPKPVAEPGLIAVNRPLAERLGITLGESDAELAQLFAG
CCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCHHHHHHCCCCCCCHHHHHHHHCC
NVVPMGAAPLAQVYAGHQFGGWSQQLGDGRAVMLGEVVAPDGARFDVQLKGAGQTPYSRM
CCCCCCCHHHHHHHCCCCCCCHHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHC
GDGRAWLGPVLREYIVSEAMAALGIPTTRALAAVTTGEIVLREARMPGAVLTRVAASHIR
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VGTFQYFAARQDVDALQALLDHTIARHYPDVDGPSGLLDAALQAQADLIAKWMGVGFIHG
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VMNTDNMTLSGETIDYGPCAFMDTYEANKVFSSIDQFGRYAYAQQPQIAAWNLAQLATAL
HCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LPLMPDRDAAIEEFTEAVNGFAARFDTAWHGVLRAKLGLVSEQEGDAQLAFDLLNRMEQG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
GGDFTQVFRALSGPEPERAAEAFAAPAVLAPWLKAWRARLARDNVAKAARIASMQADNPA
CCHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LIPRNHRIEEVIQAAVKGDFAPFERLTTALQDPFTDRPEFADLQATPARSEAVTQTFCGT
CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA