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The map label for this gene is radA [H]

Identifier: 89054203

GI number: 89054203

Start: 1693359

End: 1694726

Strand: Reverse

Name: radA [H]

Synonym: Jann_1712

Alternate gene names: 89054203

Gene position: 1694726-1693359 (Counterclockwise)

Preceding gene: 89054205

Following gene: 89054202

Centisome position: 39.25

GC content: 65.64

Gene sequence:

>1368_bases
ATGGCAAAACCCGTCACCCAATTCACCTGTTCCAACTGCGGCGCGGTCCACAAGAAGTGGTCCGGGCGCTGTGATGACTG
CGGCGAGTGGAACACGATCCGCGAGGAAGCGCCTTTGGGGTCCGGGCCCGGCAAGGCGGCGTTGGGCTCAGCCAAGGGCA
AGCGGATGATCCTGAAGGATCTGCGCACCAAGGAGACGCCCCCGCCGCGGCAATCGGCGGGCGTGGCGGAGCTGGACCGC
GTGTTGGGGGGCGGGTTGGTGCCGGCCTCCGCCACGCTGGTGGGCGGCGATCCCGGCATCGGCAAATCGACGCTGCTGTT
GCAGGCGGCGGCGGCGTTCGCGCGGCAGGGGTTGAAGGTGATTTATGTCTCCGGCGAGGAGGCCACGGCACAGGTGCGGA
TGCGGGCGGAGCGGTTGGGCTTGTCCGAGTCTGCGGTCATGCTGGCCGCAGAGACCAACCTGCGCGACATCCTGACGACG
CTGGAGGCGGAAGCGCCGGATCTGGCGATCATCGATTCGATCCAGACGATGTGGCTGGATACGGTGGATTCTGCGCCGGG
GAGCGTCAGCCAGGTCCGCGCGTCGTCCCACGAGTTGACGACCTTCGCCAAACGGCGCGGCACGAGCGTGATGCTGGTGG
GGCACGTGACGAAGGAGGGGCAGATCGCGGGGCCACGCGTGGTGGAGCATATGGTCGATACGGTGCTCTATTTCGAGGGC
GAGCGCGGGCATCAGTTCCGCATCCTGCGCAGCGTGAAAAACCGCTTTGGTCCGGCGGACGAGATTGGCGTGTTCGAGAT
GACGGGGCGGGGGTTGGCGGAGGTGTCAAACCCGTCGGCGCTGTTTTTATCCGACCGCGAGCAGCCCGCGCCGGGATCGG
TGGTGTTTGCGGGCATCGAGGGCACGCGGCCCGTGCTGGTGGAGTTTCAGGCGCTGGTCGCCCCGTCGAACCTGAGCCAG
CCGCGCCGCGCCGTGGTGGGCTGGGACGGATCGCGTCTGTCGATGATATTGGCGGTGCTGGAGGCGCGCGCGGGCATCAC
GTTTCAGGGCCTCGACGTCTATCTGAACATCGCGGGCGGCATGCGGATTAGTGAACCCGCCGCCGATCTGGCCGTGGCCA
CAGCACTCCTGAGCGCGCGGGAAGACGCCGCAATCCCGCGCGAAACGGTGGTTTTTGGGGAATTGTCGCTGTCGGGCGCG
TTACGTCCCGTCTCTCAGGCAGAAAACCGGTTGAAAGAGGCGGTGAAACTTGGTTTTTCCACTGCAATCGCGCCTTCGGG
CTGTCGGATCGCCGATGATGCGGGCGTCACAGTGAAAAGCTTTAAGGATCTCCCTACTTTCGTGGGCGACATCTTTGGGG
CAGGTTGA

Upstream 100 bases:

>100_bases
AGGACACACGATGGGGCGCAACCATGGCGGCGGCATGTCAACACGGGGACCAACCCGCCCCCTATTCCCCTTCCCGCCCG
CCTCCGCTACACGGGCCGCC

Downstream 100 bases:

>100_bases
CCGCCAAACGGCGCAGAAGAAACGTCCCCGCCCGGCGGGGGGTTGAGGGAAGAGGCACAGATGGACGGTTTTACGATATT
TGACGGGGTGGTCGGCGGTG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MAKPVTQFTCSNCGAVHKKWSGRCDDCGEWNTIREEAPLGSGPGKAALGSAKGKRMILKDLRTKETPPPRQSAGVAELDR
VLGGGLVPASATLVGGDPGIGKSTLLLQAAAAFARQGLKVIYVSGEEATAQVRMRAERLGLSESAVMLAAETNLRDILTT
LEAEAPDLAIIDSIQTMWLDTVDSAPGSVSQVRASSHELTTFAKRRGTSVMLVGHVTKEGQIAGPRVVEHMVDTVLYFEG
ERGHQFRILRSVKNRFGPADEIGVFEMTGRGLAEVSNPSALFLSDREQPAPGSVVFAGIEGTRPVLVEFQALVAPSNLSQ
PRRAVVGWDGSRLSMILAVLEARAGITFQGLDVYLNIAGGMRISEPAADLAVATALLSAREDAAIPRETVVFGELSLSGA
LRPVSQAENRLKEAVKLGFSTAIAPSGCRIADDAGVTVKSFKDLPTFVGDIFGAG

Sequences:

>Translated_455_residues
MAKPVTQFTCSNCGAVHKKWSGRCDDCGEWNTIREEAPLGSGPGKAALGSAKGKRMILKDLRTKETPPPRQSAGVAELDR
VLGGGLVPASATLVGGDPGIGKSTLLLQAAAAFARQGLKVIYVSGEEATAQVRMRAERLGLSESAVMLAAETNLRDILTT
LEAEAPDLAIIDSIQTMWLDTVDSAPGSVSQVRASSHELTTFAKRRGTSVMLVGHVTKEGQIAGPRVVEHMVDTVLYFEG
ERGHQFRILRSVKNRFGPADEIGVFEMTGRGLAEVSNPSALFLSDREQPAPGSVVFAGIEGTRPVLVEFQALVAPSNLSQ
PRRAVVGWDGSRLSMILAVLEARAGITFQGLDVYLNIAGGMRISEPAADLAVATALLSAREDAAIPRETVVFGELSLSGA
LRPVSQAENRLKEAVKLGFSTAIAPSGCRIADDAGVTVKSFKDLPTFVGDIFGAG
>Mature_454_residues
AKPVTQFTCSNCGAVHKKWSGRCDDCGEWNTIREEAPLGSGPGKAALGSAKGKRMILKDLRTKETPPPRQSAGVAELDRV
LGGGLVPASATLVGGDPGIGKSTLLLQAAAAFARQGLKVIYVSGEEATAQVRMRAERLGLSESAVMLAAETNLRDILTTL
EAEAPDLAIIDSIQTMWLDTVDSAPGSVSQVRASSHELTTFAKRRGTSVMLVGHVTKEGQIAGPRVVEHMVDTVLYFEGE
RGHQFRILRSVKNRFGPADEIGVFEMTGRGLAEVSNPSALFLSDREQPAPGSVVFAGIEGTRPVLVEFQALVAPSNLSQP
RRAVVGWDGSRLSMILAVLEARAGITFQGLDVYLNIAGGMRISEPAADLAVATALLSAREDAAIPRETVVFGELSLSGAL
RPVSQAENRLKEAVKLGFSTAIAPSGCRIADDAGVTVKSFKDLPTFVGDIFGAG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=437, Percent_Identity=47.1395881006865, Blast_Score=387, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 47987; Mature: 47856

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPVTQFTCSNCGAVHKKWSGRCDDCGEWNTIREEAPLGSGPGKAALGSAKGKRMILKD
CCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHH
LRTKETPPPRQSAGVAELDRVLGGGLVPASATLVGGDPGIGKSTLLLQAAAAFARQGLKV
HHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEE
IYVSGEEATAQVRMRAERLGLSESAVMLAAETNLRDILTTLEAEAPDLAIIDSIQTMWLD
EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
TVDSAPGSVSQVRASSHELTTFAKRRGTSVMLVGHVTKEGQIAGPRVVEHMVDTVLYFEG
HHCCCCCCHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEEEC
ERGHQFRILRSVKNRFGPADEIGVFEMTGRGLAEVSNPSALFLSDREQPAPGSVVFAGIE
CCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCEEEEECCCCCCCCCEEEEECC
GTRPVLVEFQALVAPSNLSQPRRAVVGWDGSRLSMILAVLEARAGITFQGLDVYLNIAGG
CCCCEEEEHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCEEECEEEEEEECCC
MRISEPAADLAVATALLSAREDAAIPRETVVFGELSLSGALRPVSQAENRLKEAVKLGFS
CEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCHH
TAIAPSGCRIADDAGVTVKSFKDLPTFVGDIFGAG
HCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKPVTQFTCSNCGAVHKKWSGRCDDCGEWNTIREEAPLGSGPGKAALGSAKGKRMILKD
CCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHH
LRTKETPPPRQSAGVAELDRVLGGGLVPASATLVGGDPGIGKSTLLLQAAAAFARQGLKV
HHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEE
IYVSGEEATAQVRMRAERLGLSESAVMLAAETNLRDILTTLEAEAPDLAIIDSIQTMWLD
EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
TVDSAPGSVSQVRASSHELTTFAKRRGTSVMLVGHVTKEGQIAGPRVVEHMVDTVLYFEG
HHCCCCCCHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEEEC
ERGHQFRILRSVKNRFGPADEIGVFEMTGRGLAEVSNPSALFLSDREQPAPGSVVFAGIE
CCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCEEEEECCCCCCCCCEEEEECC
GTRPVLVEFQALVAPSNLSQPRRAVVGWDGSRLSMILAVLEARAGITFQGLDVYLNIAGG
CCCCEEEEHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCEEECEEEEEEECCC
MRISEPAADLAVATALLSAREDAAIPRETVVFGELSLSGALRPVSQAENRLKEAVKLGFS
CEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCHH
TAIAPSGCRIADDAGVTVKSFKDLPTFVGDIFGAG
HCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA