Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89054200

Identifier: 89054200

GI number: 89054200

Start: 1691139

End: 1691393

Strand: Reverse

Name: 89054200

Synonym: Jann_1709

Alternate gene names: NA

Gene position: 1691393-1691139 (Counterclockwise)

Preceding gene: 89054202

Following gene: 89054198

Centisome position: 39.17

GC content: 68.24

Gene sequence:

>255_bases
GTGCCACCCTGGGGCTGCATCCAGCGAAAGGACAATCCCGTGACCGACCCGATCAAAACCCGCCCCGATGGCTCCATCGA
CACGCAATTCTACATGGCGCGCGGACGACAGGCCCGCAGCGACGCGGCCCGCGATATGGTGCGATATGTCGCCCCGTCCG
CCGAACGGCGCGCGGCGGCTCGGTCCAGACGCGCCCTGGTGCCGGTCTGCGCCGTGGTTGTTGCCATTGTGGCGCTGGCC
CCATCGTGGATCTGA

Upstream 100 bases:

>100_bases
AAATCGGCAGGCATCTCAAGGGGATTGGGGGATCTTGGGCAAATCCCAAGGCTCTCTTGAGGAGATCACAAGGGCGTCTT
CAAGCGTGGCGTGACGGCCC

Downstream 100 bases:

>100_bases
GCGCCGGGCCCACCTACCGCCTGCCGAAGGTGACACTCATCCCCGCCAACAGCAGAACCGCCGCGCCGCCTGCATACATC
CACAGACCTGCGCGCAGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MPPWGCIQRKDNPVTDPIKTRPDGSIDTQFYMARGRQARSDAARDMVRYVAPSAERRAAARSRRALVPVCAVVVAIVALA
PSWI

Sequences:

>Translated_84_residues
MPPWGCIQRKDNPVTDPIKTRPDGSIDTQFYMARGRQARSDAARDMVRYVAPSAERRAAARSRRALVPVCAVVVAIVALA
PSWI
>Mature_83_residues
PPWGCIQRKDNPVTDPIKTRPDGSIDTQFYMARGRQARSDAARDMVRYVAPSAERRAAARSRRALVPVCAVVVAIVALAP
SWI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9279; Mature: 9148

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPWGCIQRKDNPVTDPIKTRPDGSIDTQFYMARGRQARSDAARDMVRYVAPSAERRAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH
RSRRALVPVCAVVVAIVALAPSWI
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PPWGCIQRKDNPVTDPIKTRPDGSIDTQFYMARGRQARSDAARDMVRYVAPSAERRAAA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH
RSRRALVPVCAVVVAIVALAPSWI
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA