Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89053782

Identifier: 89053782

GI number: 89053782

Start: 1252980

End: 1253246

Strand: Direct

Name: 89053782

Synonym: Jann_1291

Alternate gene names: NA

Gene position: 1252980-1253246 (Clockwise)

Preceding gene: 89053778

Following gene: 89053791

Centisome position: 29.02

GC content: 48.31

Gene sequence:

>267_bases
TTGTCCGCACTGCGGACCTTGCCAAACCTGAAAACTACAGGGGCAAAAAACCTGTCAAAACTGCAAAGGTTTTGCCGGGG
GTTTTTGTCATACCTAAGCAATTGGTTGGGCTTGGAGCGGTGTGGACCGGAAAAAACCTTCGATTTAGGTGAAAAACTCG
ATCCACAACATATGGTGTTTGGCCTTTCTGAACTCCCCAACCCACTGCAATTGTGGGCAAAGGCATTGTTTTTGGCGGGT
GATGTGTATGGCGGTTTCGTTCCTTAG

Upstream 100 bases:

>100_bases
GCGCCATGCGGTAAATGCGGGATCGCTCATTGTCAATCTGCCCGCCGATCAGGCAACGAACTGAAGGCAGACCCTCAGAA
ACTGACTTCCAAAGGCAGCT

Downstream 100 bases:

>100_bases
CTTGGAACCATTTTGGAAAGACGTTTTAGGTGCTGTGCGGTCGCTGCGAGGAGGAATTCTTCGTTGGCTCCTTTCAGGCC
TCTGAGCCGGAGGCGTCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MSALRTLPNLKTTGAKNLSKLQRFCRGFLSYLSNWLGLERCGPEKTFDLGEKLDPQHMVFGLSELPNPLQLWAKALFLAG
DVYGGFVP

Sequences:

>Translated_88_residues
MSALRTLPNLKTTGAKNLSKLQRFCRGFLSYLSNWLGLERCGPEKTFDLGEKLDPQHMVFGLSELPNPLQLWAKALFLAG
DVYGGFVP
>Mature_87_residues
SALRTLPNLKTTGAKNLSKLQRFCRGFLSYLSNWLGLERCGPEKTFDLGEKLDPQHMVFGLSELPNPLQLWAKALFLAGD
VYGGFVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9815; Mature: 9683

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALRTLPNLKTTGAKNLSKLQRFCRGFLSYLSNWLGLERCGPEKTFDLGEKLDPQHMVF
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
GLSELPNPLQLWAKALFLAGDVYGGFVP
HHHHCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SALRTLPNLKTTGAKNLSKLQRFCRGFLSYLSNWLGLERCGPEKTFDLGEKLDPQHMVF
CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
GLSELPNPLQLWAKALFLAGDVYGGFVP
HHHHCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA