Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89053669

Identifier: 89053669

GI number: 89053669

Start: 1141745

End: 1141993

Strand: Direct

Name: 89053669

Synonym: Jann_1178

Alternate gene names: NA

Gene position: 1141745-1141993 (Clockwise)

Preceding gene: 89053668

Following gene: 89053670

Centisome position: 26.44

GC content: 63.05

Gene sequence:

>249_bases
ATGACCAAACGCCAAACCATCTCGGACGCCGAACATCGCCGCGTGCGCCAGATCAGGCGCGCCGCGATTGTGATGGCCGT
CACCATGGTCGTCTGGATGGGTGCGCAATATCTGGGTGGCCAGATGGGCTGGCCCGTGCGCTTCGTGTTCCTCTTCGACC
TTGCGGCGTTTGCGGCACTGGTATGGGCGCTCGTCGTGACGTATTGGGTGTGGAGAGAGCGCAAGCGCACGCGCGACGAC
CAGGGATAA

Upstream 100 bases:

>100_bases
AGGTCGAGGGCGGCGACGTCTACTGACAGCGCAAAACGCGCTCTGCGGCCAAGGCGCGCAGCCCCTCCCACACGGGGGGC
GGCTGGCGTAGGTTAGACCC

Downstream 100 bases:

>100_bases
GACGCCATGTTGCAGGACAAAGACCGGATCTTCACCAATATCTACGGCATGCACGACCGGTCCCTGGCCGGTGCCAAGCA
GCGTGGCCATTGGGATGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: URF1 [H]

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MTKRQTISDAEHRRVRQIRRAAIVMAVTMVVWMGAQYLGGQMGWPVRFVFLFDLAAFAALVWALVVTYWVWRERKRTRDD
QG

Sequences:

>Translated_82_residues
MTKRQTISDAEHRRVRQIRRAAIVMAVTMVVWMGAQYLGGQMGWPVRFVFLFDLAAFAALVWALVVTYWVWRERKRTRDD
QG
>Mature_81_residues
TKRQTISDAEHRRVRQIRRAAIVMAVTMVVWMGAQYLGGQMGWPVRFVFLFDLAAFAALVWALVVTYWVWRERKRTRDDQ
G

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9673; Mature: 9541

Theoretical pI: Translated: 11.89; Mature: 11.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRQTISDAEHRRVRQIRRAAIVMAVTMVVWMGAQYLGGQMGWPVRFVFLFDLAAFAAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VWALVVTYWVWRERKRTRDDQG
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TKRQTISDAEHRRVRQIRRAAIVMAVTMVVWMGAQYLGGQMGWPVRFVFLFDLAAFAAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VWALVVTYWVWRERKRTRDDQG
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1909571 [H]