Click here to switch to the map view.

The map label for this gene is perM [C]

Identifier: 89053547

GI number: 89053547

Start: 1009556

End: 1010752

Strand: Direct

Name: perM [C]

Synonym: Jann_1056

Alternate gene names: 89053547

Gene position: 1009556-1010752 (Clockwise)

Preceding gene: 89053546

Following gene: 89053548

Centisome position: 23.38

GC content: 63.91

Gene sequence:

>1197_bases
ATGGTGGCAGCGCGGTACAGGTCCGCTATCCATGGCCATTGCCCCCCTTGCGCATCCCCCGCCCCATGGCGCATCAAGGG
CACAGCACGAAAGGCCCCGCCCATGGCACTGCCCGTCCGGCAACAAGCGATGTATTGGTCGATCTCCGCGGCCGTGTTCC
TCCTGCTTTTGTGGGTGCTCGGCGGTGTCATCATGCCGTTCCTCGTGGGCGGCGCGATTGCCTATTTCCTTGATCCCGTC
GCCGACCGGCTGGAGAGGTTGGGCTGTTCGCGCGCCATGGCCACGACGCTGATCTTTGTGATCATGATCGTCGCGGTGGT
CACGATCGTGCTGGCGATCGTCCCGCTTCTGGTCCAGCAGGCCTCCGGCCTTGTCGCCGCGGCGCCGGGTATTTTTGAGC
AGCTTCGTGATTTCCTGACCGAGCGCTTCCCCGGGGCATTCAGCGACGGCTCGCCGGTTCAGACATCTTTGTCCAACCTC
GGCGAGACCATTCAGTCCCGCGGGGCCGAGCTGTTGCAGACCGTCCTGTCCTCTGCCGCCGGTGTGGTCAATGTGATCGT
CTTCATTGTCGTCGTGCCCGTGGTGGCGTTCTACATGCTGCTGGACTGGGACCGGATGATCGCGCGCATTGATCAGTTGC
TGCCCCGCGATCATGCGCCGACGATCCGCATGTTGGCAGGCCGGATCGACCGAACGCTGGCGAGCTTCGTGCGCGGGCAG
GGCACGGTCTGCCTTGTTCTGGGCACCTTCTATGCGGTCGCGCTGATGGTGGTCGGCCTGCAATTCGGCCTTGTTGTGGG
GCTCATCGCCGGGCTTCTCACCTTCATTCCCTATGTCGGCGCATTGGTGGGTGGGGTTCTCGCCATTGGCCTCGCGCTGT
TCCAGTTCTGGGGAGAGTGGTGGTGGATCATCAGCGTCGTCGCCATCTTCATGGTGGGTCAGGCGCTGGAGGGGAACGTT
CTGACGCCAAAACTCGTCGGGTCCTCCGTCGGCCTGCACCCGGTCTGGTTGATCTTTGCGCTGTCGGCCTTTGGCACCGT
CTTCGGCTTTGTCGGCATGCTGGTGGGCGTGCCGGTGGCCGCGGTGATCGGCGTGCTCGTGCGCTATTTCGTGGAACGCT
ATCAGGAGGGGCTGCTGTATCAGGGTGTTTCGGCGCAGGACGCCCCGCCCGACGATAGCCCCAACCCCGACGTCTGA

Upstream 100 bases:

>100_bases
TCAAACCGCCTCGGCCATCGCCGGTTTCATCGCCCAGGCCTGACGCGCGCGCCCGGCCACCGCGGCAAAAATTCCGGGGC
CAATCGCACCTTTGATGTGA

Downstream 100 bases:

>100_bases
TGTCCCGTCAGCTGACCTTTGACCTGCCGCTCCGTCCCGCGATGGGGCGAGATGATTTCTTTGTCTCCGCCGCCAATGCA
GGTGCGGTGGCGCAGATCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MVAARYRSAIHGHCPPCASPAPWRIKGTARKAPPMALPVRQQAMYWSISAAVFLLLLWVLGGVIMPFLVGGAIAYFLDPV
ADRLERLGCSRAMATTLIFVIMIVAVVTIVLAIVPLLVQQASGLVAAAPGIFEQLRDFLTERFPGAFSDGSPVQTSLSNL
GETIQSRGAELLQTVLSSAAGVVNVIVFIVVVPVVAFYMLLDWDRMIARIDQLLPRDHAPTIRMLAGRIDRTLASFVRGQ
GTVCLVLGTFYAVALMVVGLQFGLVVGLIAGLLTFIPYVGALVGGVLAIGLALFQFWGEWWWIISVVAIFMVGQALEGNV
LTPKLVGSSVGLHPVWLIFALSAFGTVFGFVGMLVGVPVAAVIGVLVRYFVERYQEGLLYQGVSAQDAPPDDSPNPDV

Sequences:

>Translated_398_residues
MVAARYRSAIHGHCPPCASPAPWRIKGTARKAPPMALPVRQQAMYWSISAAVFLLLLWVLGGVIMPFLVGGAIAYFLDPV
ADRLERLGCSRAMATTLIFVIMIVAVVTIVLAIVPLLVQQASGLVAAAPGIFEQLRDFLTERFPGAFSDGSPVQTSLSNL
GETIQSRGAELLQTVLSSAAGVVNVIVFIVVVPVVAFYMLLDWDRMIARIDQLLPRDHAPTIRMLAGRIDRTLASFVRGQ
GTVCLVLGTFYAVALMVVGLQFGLVVGLIAGLLTFIPYVGALVGGVLAIGLALFQFWGEWWWIISVVAIFMVGQALEGNV
LTPKLVGSSVGLHPVWLIFALSAFGTVFGFVGMLVGVPVAAVIGVLVRYFVERYQEGLLYQGVSAQDAPPDDSPNPDV
>Mature_398_residues
MVAARYRSAIHGHCPPCASPAPWRIKGTARKAPPMALPVRQQAMYWSISAAVFLLLLWVLGGVIMPFLVGGAIAYFLDPV
ADRLERLGCSRAMATTLIFVIMIVAVVTIVLAIVPLLVQQASGLVAAAPGIFEQLRDFLTERFPGAFSDGSPVQTSLSNL
GETIQSRGAELLQTVLSSAAGVVNVIVFIVVVPVVAFYMLLDWDRMIARIDQLLPRDHAPTIRMLAGRIDRTLASFVRGQ
GTVCLVLGTFYAVALMVVGLQFGLVVGLIAGLLTFIPYVGALVGGVLAIGLALFQFWGEWWWIISVVAIFMVGQALEGNV
LTPKLVGSSVGLHPVWLIFALSAFGTVFGFVGMLVGVPVAAVIGVLVRYFVERYQEGLLYQGVSAQDAPPDDSPNPDV

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=322, Percent_Identity=29.5031055900621, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI87082271, Length=308, Percent_Identity=25, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42617; Mature: 42617

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]