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The map label for this gene is exbD [H]

Identifier: 89053462

GI number: 89053462

Start: 927313

End: 927726

Strand: Direct

Name: exbD [H]

Synonym: Jann_0971

Alternate gene names: 89053462

Gene position: 927313-927726 (Clockwise)

Preceding gene: 89053461

Following gene: 89053463

Centisome position: 21.48

GC content: 63.53

Gene sequence:

>414_bases
ATGGCCGAGATCAACGTCACGCCCTTCGTGGATGTGATGCTGTGTTTGCTGATCATTTTCATGGTCGCGGCCCCGCTGAT
GACTGTGGGTGTCCCGATTGACCTGCCCGATACCTCTGCCGAGGCGTTGCCCTCCGAGCAGGAGGAGCCGCTGACCGTGA
CGCTGGCCGCCGATGGCCGCGTGATGTTGCAGACAACTGAGATTGCCCGCGACGAAATTGTGCCGCGCCTGCAGGCGATT
GCGGCGGAACGTGACAGCCCGCGCATCTTCGTGCGCGCCGATGGTGGCATTCCCTACAGCGACGTGATGGAGGTTATGGG
CGCGCTGAATGCGGGCGGGTTCCGCGAGATTGGTCTGGTGACGGATGCGGGTGGCCCCCGTTTGAACGGCACCTCCGTTG
GGGAAGGGGAGTGA

Upstream 100 bases:

>100_bases
CCACCCTTCTCAGCCGGCAGCTCGACTGATGGGCGCGTCGGTTGCACAGCGCGGAGCGGGCCGTCGGCGGGGACGCGCAC
GTCGCGGTGGTGCACAGCCC

Downstream 100 bases:

>100_bases
CAGGGCGATGCCCCAGGACATGCGTCTCTCTCTCTACGCTTCGGGAAGTCTGCACGTGGGCCTTCTGGCCTGGGTGGCCC
TGGGCGGCATGCTGTTTGAC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAEINVTPFVDVMLCLLIIFMVAAPLMTVGVPIDLPDTSAEALPSEQEEPLTVTLAADGRVMLQTTEIARDEIVPRLQAI
AAERDSPRIFVRADGGIPYSDVMEVMGALNAGGFREIGLVTDAGGPRLNGTSVGEGE

Sequences:

>Translated_137_residues
MAEINVTPFVDVMLCLLIIFMVAAPLMTVGVPIDLPDTSAEALPSEQEEPLTVTLAADGRVMLQTTEIARDEIVPRLQAI
AAERDSPRIFVRADGGIPYSDVMEVMGALNAGGFREIGLVTDAGGPRLNGTSVGEGE
>Mature_136_residues
AEINVTPFVDVMLCLLIIFMVAAPLMTVGVPIDLPDTSAEALPSEQEEPLTVTLAADGRVMLQTTEIARDEIVPRLQAIA
AERDSPRIFVRADGGIPYSDVMEVMGALNAGGFREIGLVTDAGGPRLNGTSVGEGE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=120, Percent_Identity=40.8333333333333, Blast_Score=96, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14468; Mature: 14337

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEINVTPFVDVMLCLLIIFMVAAPLMTVGVPIDLPDTSAEALPSEQEEPLTVTLAADGR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCEEEEEECCCE
VMLQTTEIARDEIVPRLQAIAAERDSPRIFVRADGGIPYSDVMEVMGALNAGGFREIGLV
EEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TDAGGPRLNGTSVGEGE
ECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEINVTPFVDVMLCLLIIFMVAAPLMTVGVPIDLPDTSAEALPSEQEEPLTVTLAADGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCEEEEEECCCE
VMLQTTEIARDEIVPRLQAIAAERDSPRIFVRADGGIPYSDVMEVMGALNAGGFREIGLV
EEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TDAGGPRLNGTSVGEGE
ECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]