Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89053449
Identifier: 89053449
GI number: 89053449
Start: 917435
End: 918682
Strand: Direct
Name: 89053449
Synonym: Jann_0958
Alternate gene names: NA
Gene position: 917435-918682 (Clockwise)
Preceding gene: 89053447
Following gene: 89053452
Centisome position: 21.25
GC content: 61.3
Gene sequence:
>1248_bases ATGGCACTTGGCGACTCCCTCAGAACACTGACGCTTGACGAAGGGCGGGCACTGCCGCTGTGGCGCAGGCCCGTGGCGCT TCTGGCGGTGATGTCGTTTGCGATGCCCATCGCCTTTGCGACCTGGGCCGCGCTTCTCAACAACTTTGTGGTCGAGGTTG CGGCGTTTGACGGGGCCGATATCGGCTGGCTGCACACGGTTCGCGAAATCCCCGGCTTTCTGGCCATCGGGGTGATCTTC CTGATCATCTTCATCCGCGAGCAGGTCCTCGGTATCATCTCCCTCGTCCTTTTGGGATGTGCGACGGCGATGACGGCGCA GTTCCCATCGCTGGGAGGTCTGCTGTTCGTGACGCTGCTCAGCTCCATCGGGTTCCACTATTATGAGACGGTCAACCAAT CGCTGCAATTGCAATGGATCGACAAGAAACGCGCCCCGCAAACCCTGGGGTGGTTGATGAGCGTGGGCTCGGGCGCGACG CTGCTGACCTATCTGCTGATCGTGGTGACATGGCGGACGTATGATTTGAGCTACGATTTCGTCTACTGGATTTCGGGCGG GGTGACGGCGGTTTTGGCTGTGATCTCCCTGCTGCTGTACCCACAGTTTGAATCGCCCACACCGCAGACCAAGAAGATGG TGCTGCGCCGCCGCTACTGGCTCTATTACGCGCTGCAATTCATGTCCGGCGCGCGGCGGCAGATTTTCATGGTCTTCGCG GGCTTCATGATGGTGGAGCGCTACGGGTTCGAGGTGCACCAGATCACCGCGCTTTATATGGTCACGCTGCTGGCCAACAT GATCGTGGCCCCGTTTCTGGGCGGCCTTGTGGGCCGGTTCGGAGAGCGGCTGGCGCTGATCATCGAATATACGGGGCTGG CGATGATTTTCGTCCTGTATGCGGGCCTTTACGTCTTTGACTGGGGCGCGGGGCTGGCGGCTGGCCTCTATATCGCGAAC CACATTTTCTTTGCGCTGGCCCTGGCGATCAAAACCTATTTCCAGAAAATCGCCTCCCCTGAGGATATTGCGCCGACGGC CGCCGTGGCGTTCACGATCAACCACATCGCGGCGGTGTTCCTGCCGGCGGGGCTTGGCTATCTGTGGCTGTCGTCACCGA CCTCCGTCTTCATCGCGGCGGCAGGGATGGCGATGGTGTCGCTGGGGCTGTCGTTTCTGGTGCCCCGCCACCCGGCCCCG GGGCATGAGACGACGCGCCCCAACCTGAATGCGCACCCGGCAGAGTAG
Upstream 100 bases:
>100_bases ATGCGAGATTTTGTACCTGTGCCATGATGTGCATTATCGCACGATCGTTTGGCACATCCTAGCCCTCGCAATCGTGCGAT GAAGGGCGTAGAGCGGGGGC
Downstream 100 bases:
>100_bases GTCAGACGCCGCCGCGAGGTCGAGCGTCACGCATCGGTTCCTGCACGCGAACACAGCGGCGTCACGTCAAACCTGTCGAT CAGGCCATTGTGCAACCGAA
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family; Transporter MFS Superfamily; Permease Facilitator Superfamily; Permease Of Facilitator Superfamily; Facilitator Superfamily Permease; MFS Protein Permease Component; Multidrug-Efflux Transporter MFS Family; Facilitator Family Transporter
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MALGDSLRTLTLDEGRALPLWRRPVALLAVMSFAMPIAFATWAALLNNFVVEVAAFDGADIGWLHTVREIPGFLAIGVIF LIIFIREQVLGIISLVLLGCATAMTAQFPSLGGLLFVTLLSSIGFHYYETVNQSLQLQWIDKKRAPQTLGWLMSVGSGAT LLTYLLIVVTWRTYDLSYDFVYWISGGVTAVLAVISLLLYPQFESPTPQTKKMVLRRRYWLYYALQFMSGARRQIFMVFA GFMMVERYGFEVHQITALYMVTLLANMIVAPFLGGLVGRFGERLALIIEYTGLAMIFVLYAGLYVFDWGAGLAAGLYIAN HIFFALALAIKTYFQKIASPEDIAPTAAVAFTINHIAAVFLPAGLGYLWLSSPTSVFIAAAGMAMVSLGLSFLVPRHPAP GHETTRPNLNAHPAE
Sequences:
>Translated_415_residues MALGDSLRTLTLDEGRALPLWRRPVALLAVMSFAMPIAFATWAALLNNFVVEVAAFDGADIGWLHTVREIPGFLAIGVIF LIIFIREQVLGIISLVLLGCATAMTAQFPSLGGLLFVTLLSSIGFHYYETVNQSLQLQWIDKKRAPQTLGWLMSVGSGAT LLTYLLIVVTWRTYDLSYDFVYWISGGVTAVLAVISLLLYPQFESPTPQTKKMVLRRRYWLYYALQFMSGARRQIFMVFA GFMMVERYGFEVHQITALYMVTLLANMIVAPFLGGLVGRFGERLALIIEYTGLAMIFVLYAGLYVFDWGAGLAAGLYIAN HIFFALALAIKTYFQKIASPEDIAPTAAVAFTINHIAAVFLPAGLGYLWLSSPTSVFIAAAGMAMVSLGLSFLVPRHPAP GHETTRPNLNAHPAE >Mature_414_residues ALGDSLRTLTLDEGRALPLWRRPVALLAVMSFAMPIAFATWAALLNNFVVEVAAFDGADIGWLHTVREIPGFLAIGVIFL IIFIREQVLGIISLVLLGCATAMTAQFPSLGGLLFVTLLSSIGFHYYETVNQSLQLQWIDKKRAPQTLGWLMSVGSGATL LTYLLIVVTWRTYDLSYDFVYWISGGVTAVLAVISLLLYPQFESPTPQTKKMVLRRRYWLYYALQFMSGARRQIFMVFAG FMMVERYGFEVHQITALYMVTLLANMIVAPFLGGLVGRFGERLALIIEYTGLAMIFVLYAGLYVFDWGAGLAAGLYIANH IFFALALAIKTYFQKIASPEDIAPTAAVAFTINHIAAVFLPAGLGYLWLSSPTSVFIAAAGMAMVSLGLSFLVPRHPAPG HETTRPNLNAHPAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45718; Mature: 45587
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGDSLRTLTLDEGRALPLWRRPVALLAVMSFAMPIAFATWAALLNNFVVEVAAFDGAD CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC IGWLHTVREIPGFLAIGVIFLIIFIREQVLGIISLVLLGCATAMTAQFPSLGGLLFVTLL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH SSIGFHYYETVNQSLQLQWIDKKRAPQTLGWLMSVGSGATLLTYLLIVVTWRTYDLSYDF HHHCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCE VYWISGGVTAVLAVISLLLYPQFESPTPQTKKMVLRRRYWLYYALQFMSGARRQIFMVFA EEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH GFMMVERYGFEVHQITALYMVTLLANMIVAPFLGGLVGRFGERLALIIEYTGLAMIFVLY HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLYVFDWGAGLAAGLYIANHIFFALALAIKTYFQKIASPEDIAPTAAVAFTINHIAAVF HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LPAGLGYLWLSSPTSVFIAAAGMAMVSLGLSFLVPRHPAPGHETTRPNLNAHPAE HHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ALGDSLRTLTLDEGRALPLWRRPVALLAVMSFAMPIAFATWAALLNNFVVEVAAFDGAD CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC IGWLHTVREIPGFLAIGVIFLIIFIREQVLGIISLVLLGCATAMTAQFPSLGGLLFVTLL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH SSIGFHYYETVNQSLQLQWIDKKRAPQTLGWLMSVGSGATLLTYLLIVVTWRTYDLSYDF HHHCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCE VYWISGGVTAVLAVISLLLYPQFESPTPQTKKMVLRRRYWLYYALQFMSGARRQIFMVFA EEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH GFMMVERYGFEVHQITALYMVTLLANMIVAPFLGGLVGRFGERLALIIEYTGLAMIFVLY HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLYVFDWGAGLAAGLYIANHIFFALALAIKTYFQKIASPEDIAPTAAVAFTINHIAAVF HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LPAGLGYLWLSSPTSVFIAAAGMAMVSLGLSFLVPRHPAPGHETTRPNLNAHPAE HHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA