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The map label for this gene is sotB [H]

Identifier: 89053381

GI number: 89053381

Start: 844394

End: 845560

Strand: Direct

Name: sotB [H]

Synonym: Jann_0890

Alternate gene names: 89053381

Gene position: 844394-845560 (Clockwise)

Preceding gene: 89053380

Following gene: 89053382

Centisome position: 19.56

GC content: 60.58

Gene sequence:

>1167_bases
ATGAAACGTCCCATCCTTGCATTGGCAGCCGCCGGGTTTGCCGTTGTCACGACCGAGTTCGTGATCATCGGTGTCCTGCC
ACGGCTCGCTGCTGATCTTGGCGTCACCATCGCCCAAGCTGGTCTTCTGGCAACCATCTTCGCCTTCACCGTCGCAATCG
CGGCTCCCTTCCTGACCGCTTTGGTCGCAAAGATCGAACGGAAAAAGCTGTTCGCAGCCCTACTCGCGATGATCGCCATA
TCGAACCTTCTGACGGCCATCGCACCCACATTTGAGATCTTTGCGGCGGCGCGGGTGGTCGGAGCTTTGGCCTTGCCGGT
CTTCTGGGCGGTCGGCACCGCATCGGCCGCGCAACTTGGCGGGCCAGAAGGCGGCGGTAAATCCGTGGCGATCCTCTATG
CCAGCATCTCGGCCGGTACGGTGATCGGCATCCCGCTCGGAACGCTGCTGGCTGACCTGATGGGCTGGCGTGTCATGTTT
GGCGCGATCGGCGTTCTGGCTGCCATCATGTCGCTGGCGCTGCTCGCCTTCTTCCCCACCACACCGCCCGACGCGGCACC
TTCGTTGCTGAAACAAGCCTCCATCCTGAAGCGTGGTTCGTTCCTGGCGCATCTCGTGCTGACGGCCTTTGCCTTCACGT
CGATGTTCGTGGCCTACACTTATCTGGCTGATATCCTGCAAACGCTGGCTTCTTTGCCAACAAGTCAGGTGGCCTGGGTG
CTGATGGGCTTCGGCATTGTCGGCCTCTTCGGCAACTGGCTGGCTGGCCAGTATGTTGATCGGAGCCCAATGGGTGTGAC
GGTCGTGTCTCTGGCCGCATTGTCCATTGCATCCTTCGCGACGGTTGCTCTGACCGGTCAAGGCATCCTGTTCCTGATCC
CGCTGGCCATCTGGGGCGCGGCGCAATCGGCTGGCTTCATCGGGAACCAGTTGCGTGTCATGAAAGAAGCTCCTGAAGCG
CAAGAGTTTGCATCTGCCCTCAGCGTGACCATCGCGCGGGTTGGAATTGGGCTTGGTGCGTTGATCGGCGGCAAGGTGAT
CGACGCGCGAGGTCTCGCAGCCCTTGGATCAGAGAATGCACTGATCGGCATAGCAGGTCTCGTCGTCGCGATGCTCATTA
TCATCGGCGTCCGCAGAGTGAGGTGGCATTCCCTGCCAGCAGAATAG

Upstream 100 bases:

>100_bases
CGCCTGAGCGGCACCCCACACTTGCCAAACACCGGAAGATCCCAGCGATGCGCGCCAGTGTATCGCCCCGATCCTTCCAT
GCCTGAAAGGAGGCGTTCAA

Downstream 100 bases:

>100_bases
GAACCGAAAAAGCATCCCTGTGGTCGCCCATTTTGGGCGGCCAGTTGGCCGAACTTGGGTCGTTTCGACAGGCGGCGAAA
AAGCCGAACCTCTCTCCGCC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKRPILALAAAGFAVVTTEFVIIGVLPRLAADLGVTIAQAGLLATIFAFTVAIAAPFLTALVAKIERKKLFAALLAMIAI
SNLLTAIAPTFEIFAAARVVGALALPVFWAVGTASAAQLGGPEGGGKSVAILYASISAGTVIGIPLGTLLADLMGWRVMF
GAIGVLAAIMSLALLAFFPTTPPDAAPSLLKQASILKRGSFLAHLVLTAFAFTSMFVAYTYLADILQTLASLPTSQVAWV
LMGFGIVGLFGNWLAGQYVDRSPMGVTVVSLAALSIASFATVALTGQGILFLIPLAIWGAAQSAGFIGNQLRVMKEAPEA
QEFASALSVTIARVGIGLGALIGGKVIDARGLAALGSENALIGIAGLVVAMLIIIGVRRVRWHSLPAE

Sequences:

>Translated_388_residues
MKRPILALAAAGFAVVTTEFVIIGVLPRLAADLGVTIAQAGLLATIFAFTVAIAAPFLTALVAKIERKKLFAALLAMIAI
SNLLTAIAPTFEIFAAARVVGALALPVFWAVGTASAAQLGGPEGGGKSVAILYASISAGTVIGIPLGTLLADLMGWRVMF
GAIGVLAAIMSLALLAFFPTTPPDAAPSLLKQASILKRGSFLAHLVLTAFAFTSMFVAYTYLADILQTLASLPTSQVAWV
LMGFGIVGLFGNWLAGQYVDRSPMGVTVVSLAALSIASFATVALTGQGILFLIPLAIWGAAQSAGFIGNQLRVMKEAPEA
QEFASALSVTIARVGIGLGALIGGKVIDARGLAALGSENALIGIAGLVVAMLIIIGVRRVRWHSLPAE
>Mature_388_residues
MKRPILALAAAGFAVVTTEFVIIGVLPRLAADLGVTIAQAGLLATIFAFTVAIAAPFLTALVAKIERKKLFAALLAMIAI
SNLLTAIAPTFEIFAAARVVGALALPVFWAVGTASAAQLGGPEGGGKSVAILYASISAGTVIGIPLGTLLADLMGWRVMF
GAIGVLAAIMSLALLAFFPTTPPDAAPSLLKQASILKRGSFLAHLVLTAFAFTSMFVAYTYLADILQTLASLPTSQVAWV
LMGFGIVGLFGNWLAGQYVDRSPMGVTVVSLAALSIASFATVALTGQGILFLIPLAIWGAAQSAGFIGNQLRVMKEAPEA
QEFASALSVTIARVGIGLGALIGGKVIDARGLAALGSENALIGIAGLVVAMLIIIGVRRVRWHSLPAE

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=329, Percent_Identity=30.0911854103343, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1787808, Length=371, Percent_Identity=28.0323450134771, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693198, Length=351, Percent_Identity=25.9259259259259, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786595, Length=275, Percent_Identity=25.8181818181818, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 39750; Mature: 39750

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPILALAAAGFAVVTTEFVIIGVLPRLAADLGVTIAQAGLLATIFAFTVAIAAPFLTA
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAKIERKKLFAALLAMIAISNLLTAIAPTFEIFAAARVVGALALPVFWAVGTASAAQLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GPEGGGKSVAILYASISAGTVIGIPLGTLLADLMGWRVMFGAIGVLAAIMSLALLAFFPT
CCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPPDAAPSLLKQASILKRGSFLAHLVLTAFAFTSMFVAYTYLADILQTLASLPTSQVAWV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LMGFGIVGLFGNWLAGQYVDRSPMGVTVVSLAALSIASFATVALTGQGILFLIPLAIWGA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AQSAGFIGNQLRVMKEAPEAQEFASALSVTIARVGIGLGALIGGKVIDARGLAALGSENA
HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCC
LIGIAGLVVAMLIIIGVRRVRWHSLPAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKRPILALAAAGFAVVTTEFVIIGVLPRLAADLGVTIAQAGLLATIFAFTVAIAAPFLTA
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAKIERKKLFAALLAMIAISNLLTAIAPTFEIFAAARVVGALALPVFWAVGTASAAQLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GPEGGGKSVAILYASISAGTVIGIPLGTLLADLMGWRVMFGAIGVLAAIMSLALLAFFPT
CCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPPDAAPSLLKQASILKRGSFLAHLVLTAFAFTSMFVAYTYLADILQTLASLPTSQVAWV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LMGFGIVGLFGNWLAGQYVDRSPMGVTVVSLAALSIASFATVALTGQGILFLIPLAIWGA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AQSAGFIGNQLRVMKEAPEAQEFASALSVTIARVGIGLGALIGGKVIDARGLAALGSENA
HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCC
LIGIAGLVVAMLIIIGVRRVRWHSLPAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]