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The map label for this gene is sdhC [H]

Identifier: 88658394

GI number: 88658394

Start: 941669

End: 942055

Strand: Reverse

Name: sdhC [H]

Synonym: ECH_0918

Alternate gene names: 88658394

Gene position: 942055-941669 (Counterclockwise)

Preceding gene: 88657645

Following gene: 88658456

Centisome position: 80.09

GC content: 29.2

Gene sequence:

>387_bases
ATGTCAAAAGTTAGGCCTTTATCACCGCATTTACAAATATACAAAGTTGTATATAAGCTTTCTATTATGCATAGGTTTAC
TGGTATGATACTATTTTTAGGTCTGCTGGTTCTATCATGGGGTTTTATTCTTTCTTTTTTATGTCCTCAAGTAGTATATA
GAATTTGTAGTTTTTTTTGTAATTCTTATGTTTCATTATATTCTCTAAAGTTAATAACTTTTATTTGGTTGAATGTATTG
TGCTACCATTATATGAATGGTATAAGGCATATTTTCTGGGATTTAGGATTGGGTTTGAGTAAATCTGCGGTGAGAACTAC
GGGAGTGGTAGTTGTTTTTTTATGTCTAGTCTCATCTTTTATACTTTATAGTTTTTTCTTAAGTTAA

Upstream 100 bases:

>100_bases
TTCTATTTTGTCTAATTGTTTTGTCTAAATGGTTAAGGGTGTAGTTAATCTTTATCCTGTAATTAGGCATAAATTTCTTT
TATTTTTATGAAATTTGATA

Downstream 100 bases:

>100_bases
TGATATAAAATTATGGTTAGTCATTCAGTTTATCATTGGTTAATTCAAAGGGTTACGGCTTTTGTTTTAATTCCTCTTTC
TCTGTGGTTTTTATTTAAGG

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor [C]

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSKVRPLSPHLQIYKVVYKLSIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSFFCNSYVSLYSLKLITFIWLNVL
CYHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSSFILYSFFLS

Sequences:

>Translated_128_residues
MSKVRPLSPHLQIYKVVYKLSIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSFFCNSYVSLYSLKLITFIWLNVL
CYHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSSFILYSFFLS
>Mature_127_residues
SKVRPLSPHLQIYKVVYKLSIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSFFCNSYVSLYSLKLITFIWLNVLC
YHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSSFILYSFFLS

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: NA

Molecular weight: Translated: 14854; Mature: 14723

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVRPLSPHLQIYKVVYKLSIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSFFC
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSYVSLYSLKLITFIWLNVLCYHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ILYSFFLS
HHHHHHHC
>Mature Secondary Structure 
SKVRPLSPHLQIYKVVYKLSIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSFFC
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSYVSLYSLKLITFIWLNVLCYHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ILYSFFLS
HHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Flavoprotein [C]

Metal ions: Iron-Sulfur Cluster [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor [C]

Specific reaction: succinate + acceptor = fumarate + reduced acceptor [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA