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The map label for this gene is yfjD [C]

Identifier: 88658382

GI number: 88658382

Start: 917311

End: 918612

Strand: Direct

Name: yfjD [C]

Synonym: ECH_0892

Alternate gene names: 88658382

Gene position: 917311-918612 (Clockwise)

Preceding gene: 88658233

Following gene: 88658123

Centisome position: 77.99

GC content: 30.11

Gene sequence:

>1302_bases
ATGGGTTTATTAGTAACTTCAGTATTTAGTATACTTATACTACTAATTTTATCTGCATTTTTTTCTGCTGCAGAAACAAG
TATAACTTCAATTAGTAGTTCACTTATCCATAAATTAATGCTACAGGGTAATAAAAGAGCCCAAATCATTAACACACTCA
GTCAAAAGAAAAAGCTTGTTATAAATACTGTATTAATAGGCAATACTATTATAAACATCACTGCTTCTTCTATTGCAACA
GCAATTTCTATTGAAATTTTAGGACCACAGGGGATATTATTTTCAACCGTCATTATGACATTGTTTATACTGATATTTTC
TGAAGCATTACCAAAAAGCTATGCAATACTCAATCCAGAAAAAATTGCTTTAATGATATCGTGTCCCTTATCATGTTGCG
TACTCATTTTATCCCCCATAACACTATCAATACAATATATGATAGATTGTATTTTAAAAATTCTAGACATGCATAAAGAT
AAAGAAATCATTTCAGCAGCAGAAGCTATGAGAAATTTAATCTCACTACATGATAGTAAAGGAACCATGCTAAAACAAGA
TTTAGACATGTTGAGTAGCATATTAGATTTAGCAGAAACAGAAATTTCACAAGTAATGACCCACAGGAAAAACATATTAG
CTTTTAATATAGATACAAATATAAATGATCTAATAAAAAAAATATTAGCAAGCTCTCATAGTAGAATACCATTATGGAAA
AATCAAGAAGATCAAATCGTAGGAGTAGTACATGTTAAAGATGTAATAACGCTAATACGGGAAAAAGGCAAAAATATTAC
TCAAGAAGATCTTCATAAAGTAATGACAAAACCATGGTTTGTTCCAGATACAACTCTGTTGAGTGTTCAGCTTCATAACT
TCTTAAAAAATAGAAGACATCTTGCTTTAGTAATAGATGAGTACGGAGCATTACAAGGAATAGTAACATTAGAAGATGTT
ATTGAAGAAATAGTTGGAGATATTACAGATGAACATGATATTACAACAGAAGCTCCAATAAAACAAATTTGCGAAAATAT
ATATCATATTAATGGTTCTACTTCCATTAGAGATATTAATAGGCAGTTACGTTGGAACTTACCTGATGAAGAAGCATCAA
CATTGGCAGGAGCAATTGTGTATGAAGTTGAACGTATACCTGAAGAAGGCGAGGAATTTTTACTATACGGATTGTCATTT
AAAATATTAAAGAAAAGTGGTCATACCATTTCTAGTATTCAAGTTGATACATCTCCAAAAGATACATCTACTATAAAACA
CAAGACAGAACAACAAACTTAA

Upstream 100 bases:

>100_bases
GTACACTAAAATCATAGTCAATCACAAAGAGAAAAATTCAACTTGAAAAACTCAAGAGTATTATTTATGATGTAAAGTTT
ACTTTAATGTTTGATCCTCA

Downstream 100 bases:

>100_bases
CCGAGTACACGTTCAATAATAAGACCGTTATAACCAAATTACTTATAACTGCGAGCTAGATTTGGCATTTTTGTATAAAC
TCATGTACCACTTTATCAGG

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MGLLVTSVFSILILLILSAFFSAAETSITSISSSLIHKLMLQGNKRAQIINTLSQKKKLVINTVLIGNTIINITASSIAT
AISIEILGPQGILFSTVIMTLFILIFSEALPKSYAILNPEKIALMISCPLSCCVLILSPITLSIQYMIDCILKILDMHKD
KEIISAAEAMRNLISLHDSKGTMLKQDLDMLSSILDLAETEISQVMTHRKNILAFNIDTNINDLIKKILASSHSRIPLWK
NQEDQIVGVVHVKDVITLIREKGKNITQEDLHKVMTKPWFVPDTTLLSVQLHNFLKNRRHLALVIDEYGALQGIVTLEDV
IEEIVGDITDEHDITTEAPIKQICENIYHINGSTSIRDINRQLRWNLPDEEASTLAGAIVYEVERIPEEGEEFLLYGLSF
KILKKSGHTISSIQVDTSPKDTSTIKHKTEQQT

Sequences:

>Translated_433_residues
MGLLVTSVFSILILLILSAFFSAAETSITSISSSLIHKLMLQGNKRAQIINTLSQKKKLVINTVLIGNTIINITASSIAT
AISIEILGPQGILFSTVIMTLFILIFSEALPKSYAILNPEKIALMISCPLSCCVLILSPITLSIQYMIDCILKILDMHKD
KEIISAAEAMRNLISLHDSKGTMLKQDLDMLSSILDLAETEISQVMTHRKNILAFNIDTNINDLIKKILASSHSRIPLWK
NQEDQIVGVVHVKDVITLIREKGKNITQEDLHKVMTKPWFVPDTTLLSVQLHNFLKNRRHLALVIDEYGALQGIVTLEDV
IEEIVGDITDEHDITTEAPIKQICENIYHINGSTSIRDINRQLRWNLPDEEASTLAGAIVYEVERIPEEGEEFLLYGLSF
KILKKSGHTISSIQVDTSPKDTSTIKHKTEQQT
>Mature_432_residues
GLLVTSVFSILILLILSAFFSAAETSITSISSSLIHKLMLQGNKRAQIINTLSQKKKLVINTVLIGNTIINITASSIATA
ISIEILGPQGILFSTVIMTLFILIFSEALPKSYAILNPEKIALMISCPLSCCVLILSPITLSIQYMIDCILKILDMHKDK
EIISAAEAMRNLISLHDSKGTMLKQDLDMLSSILDLAETEISQVMTHRKNILAFNIDTNINDLIKKILASSHSRIPLWKN
QEDQIVGVVHVKDVITLIREKGKNITQEDLHKVMTKPWFVPDTTLLSVQLHNFLKNRRHLALVIDEYGALQGIVTLEDVI
EEIVGDITDEHDITTEAPIKQICENIYHINGSTSIRDINRQLRWNLPDEEASTLAGAIVYEVERIPEEGEEFLLYGLSFK
ILKKSGHTISSIQVDTSPKDTSTIKHKTEQQT

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=378, Percent_Identity=24.8677248677249, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI40068055, Length=354, Percent_Identity=24.2937853107345, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI40068053, Length=354, Percent_Identity=24.2937853107345, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI94681046, Length=308, Percent_Identity=26.2987012987013, Blast_Score=85, Evalue=2e-16,
Organism=Escherichia coli, GI145693175, Length=400, Percent_Identity=30, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1790664, Length=427, Percent_Identity=22.4824355971897, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786879, Length=235, Percent_Identity=28.5106382978723, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI87082033, Length=280, Percent_Identity=25.3571428571429, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788119, Length=355, Percent_Identity=20.8450704225352, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71980512, Length=367, Percent_Identity=25.8855585831063, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17539402, Length=344, Percent_Identity=24.7093023255814, Blast_Score=72, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6324512, Length=295, Percent_Identity=27.7966101694915, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 48297; Mature: 48166

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLVTSVFSILILLILSAFFSAAETSITSISSSLIHKLMLQGNKRAQIINTLSQKKKLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
INTVLIGNTIINITASSIATAISIEILGPQGILFSTVIMTLFILIFSEALPKSYAILNPE
HHEEEECCEEEEEEHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCC
KIALMISCPLSCCVLILSPITLSIQYMIDCILKILDMHKDKEIISAAEAMRNLISLHDSK
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
GTMLKQDLDMLSSILDLAETEISQVMTHRKNILAFNIDTNINDLIKKILASSHSRIPLWK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCC
NQEDQIVGVVHVKDVITLIREKGKNITQEDLHKVMTKPWFVPDTTLLSVQLHNFLKNRRH
CCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCE
LALVIDEYGALQGIVTLEDVIEEIVGDITDEHDITTEAPIKQICENIYHINGSTSIRDIN
EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCCCCHHHHHH
RQLRWNLPDEEASTLAGAIVYEVERIPEEGEEFLLYGLSFKILKKSGHTISSIQVDTSPK
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCEEEEEEECCCCC
DTSTIKHKTEQQT
CCHHHHHHHCCCC
>Mature Secondary Structure 
GLLVTSVFSILILLILSAFFSAAETSITSISSSLIHKLMLQGNKRAQIINTLSQKKKLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
INTVLIGNTIINITASSIATAISIEILGPQGILFSTVIMTLFILIFSEALPKSYAILNPE
HHEEEECCEEEEEEHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCC
KIALMISCPLSCCVLILSPITLSIQYMIDCILKILDMHKDKEIISAAEAMRNLISLHDSK
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
GTMLKQDLDMLSSILDLAETEISQVMTHRKNILAFNIDTNINDLIKKILASSHSRIPLWK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCC
NQEDQIVGVVHVKDVITLIREKGKNITQEDLHKVMTKPWFVPDTTLLSVQLHNFLKNRRH
CCCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCE
LALVIDEYGALQGIVTLEDVIEEIVGDITDEHDITTEAPIKQICENIYHINGSTSIRDIN
EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCCCCHHHHHH
RQLRWNLPDEEASTLAGAIVYEVERIPEEGEEFLLYGLSFKILKKSGHTISSIQVDTSPK
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCEEEEEEECCCCC
DTSTIKHKTEQQT
CCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]