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The map label for this gene is petC [H]

Identifier: 88607854

GI number: 88607854

Start: 415516

End: 416268

Strand: Direct

Name: petC [H]

Synonym: APH_0403

Alternate gene names: 88607854

Gene position: 415516-416268 (Clockwise)

Preceding gene: 88607218

Following gene: 88607267

Centisome position: 28.24

GC content: 46.22

Gene sequence:

>753_bases
ATGATGCGTGCGTCGACTTTTTTATGGATATTCGTGTGTTTGCTGCCTTTAGGTGCAGTATGTAGGCATGTTGTGCCTGG
AGGTGATGTACCGAAATGGAAATTTTCAGGAATTTTTGGGACATTTGATCGACCAGCGGTGCAGCGGGGATATCAGGTGT
ATAGAGAGGTGTGTTCGAGTTGCCACTCTATGAAAAGGCTTGCCTTTCGTAATCTTCGAGAAGTAGGTTTCTCGGAGGCG
GAAGTGAAGGCGATAGCTGGTTCATACACTGTTACTGATGGGCCTAATGAATCTGGTGATATGTTTGAAAGGCCTGGTAT
ACCGTCGGATTACTTTCCTCGTCCTTTTCCAAATAAGGAGGCTGCGGCTGCTGCTAATAATGGTGCAAATCCTCCTGATT
TATCATTGATGATAAAGGCAAGGCACAGTGGGCCTGATTACGTATACAAACTGCTTACCAGTTATCAGGGGGCAGATGCT
GATGAGAACGGTTTATATGCAAATCCAGTCTTTTCAGCTGGAAGAATAGCTATGGCGCCTCCGCTCTCAGAAGGCCTTGT
GGGTTATATGGACGGCACTGAAGCCAGTATTGAAAATATGGCGAGAGATGTAGTGAATTTCCTGCAGTGGGCTGCTGAGC
CTGAAATGGAGGCGAGAAAGAAGCTAGGCATTAAGGTTGTTGTATCATTGATGGCGGGCACTGTGCTGGTTACTATGGTA
AATAGGCGACTCTGGAATATGTTGCGTAAATAG

Upstream 100 bases:

>100_bases
TTTTCGTATTTTTCTATAGTTTTGCCTTTGCTATCGAAATATGAAAAATGCAAAGAATTGCCTAGTACCCTAAGTGACAC
TGTGCCGGAGATGAAGTGAT

Downstream 100 bases:

>100_bases
CTTCTGTGGTGTGGAGTAGCCTATAGGTATTTTTACTATCGCTTTTAGGTGTGTGCACGTTGAAAGGCGCAATGAATTTG
TTCTCTTACATACTGCTGCA

Product: ubiquinol-cytochrome c reductase, cytochrome c1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MMRASTFLWIFVCLLPLGAVCRHVVPGGDVPKWKFSGIFGTFDRPAVQRGYQVYREVCSSCHSMKRLAFRNLREVGFSEA
EVKAIAGSYTVTDGPNESGDMFERPGIPSDYFPRPFPNKEAAAAANNGANPPDLSLMIKARHSGPDYVYKLLTSYQGADA
DENGLYANPVFSAGRIAMAPPLSEGLVGYMDGTEASIENMARDVVNFLQWAAEPEMEARKKLGIKVVVSLMAGTVLVTMV
NRRLWNMLRK

Sequences:

>Translated_250_residues
MMRASTFLWIFVCLLPLGAVCRHVVPGGDVPKWKFSGIFGTFDRPAVQRGYQVYREVCSSCHSMKRLAFRNLREVGFSEA
EVKAIAGSYTVTDGPNESGDMFERPGIPSDYFPRPFPNKEAAAAANNGANPPDLSLMIKARHSGPDYVYKLLTSYQGADA
DENGLYANPVFSAGRIAMAPPLSEGLVGYMDGTEASIENMARDVVNFLQWAAEPEMEARKKLGIKVVVSLMAGTVLVTMV
NRRLWNMLRK
>Mature_250_residues
MMRASTFLWIFVCLLPLGAVCRHVVPGGDVPKWKFSGIFGTFDRPAVQRGYQVYREVCSSCHSMKRLAFRNLREVGFSEA
EVKAIAGSYTVTDGPNESGDMFERPGIPSDYFPRPFPNKEAAAAANNGANPPDLSLMIKARHSGPDYVYKLLTSYQGADA
DENGLYANPVFSAGRIAMAPPLSEGLVGYMDGTEASIENMARDVVNFLQWAAEPEMEARKKLGIKVVVSLMAGTVLVTMV
NRRLWNMLRK

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c [H]

COG id: COG2857

COG function: function code C; Cytochrome c1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI21359867, Length=221, Percent_Identity=47.0588235294118, Blast_Score=211, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI17506225, Length=220, Percent_Identity=43.1818181818182, Blast_Score=143, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6324639, Length=221, Percent_Identity=46.606334841629, Blast_Score=203, Evalue=2e-53,
Organism=Drosophila melanogaster, GI24658292, Length=230, Percent_Identity=46.9565217391304, Blast_Score=205, Evalue=2e-53,
Organism=Drosophila melanogaster, GI21358225, Length=224, Percent_Identity=45.9821428571429, Blast_Score=185, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR002326
- InterPro:   IPR021157
- InterPro:   IPR009056
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N; PF02167 Cytochrom_C1 [H]

EC number: NA

Molecular weight: Translated: 27552; Mature: 27552

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRASTFLWIFVCLLPLGAVCRHVVPGGDVPKWKFSGIFGTFDRPAVQRGYQVYREVCSS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
CHSMKRLAFRNLREVGFSEAEVKAIAGSYTVTDGPNESGDMFERPGIPSDYFPRPFPNKE
HHHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AAAAANNGANPPDLSLMIKARHSGPDYVYKLLTSYQGADADENGLYANPVFSAGRIAMAP
HHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECC
PLSEGLVGYMDGTEASIENMARDVVNFLQWAAEPEMEARKKLGIKVVVSLMAGTVLVTMV
CHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NRRLWNMLRK
HHHHHHHHCC
>Mature Secondary Structure
MMRASTFLWIFVCLLPLGAVCRHVVPGGDVPKWKFSGIFGTFDRPAVQRGYQVYREVCSS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
CHSMKRLAFRNLREVGFSEAEVKAIAGSYTVTDGPNESGDMFERPGIPSDYFPRPFPNKE
HHHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AAAAANNGANPPDLSLMIKARHSGPDYVYKLLTSYQGADADENGLYANPVFSAGRIAMAP
HHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECC
PLSEGLVGYMDGTEASIENMARDVVNFLQWAAEPEMEARKKLGIKVVVSLMAGTVLVTMV
CHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NRRLWNMLRK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2541921; 12597275 [H]