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The map label for this gene is rpoZ

Identifier: 88607525

GI number: 88607525

Start: 537787

End: 538194

Strand: Reverse

Name: rpoZ

Synonym: APH_0514

Alternate gene names: 88607525

Gene position: 538194-537787 (Counterclockwise)

Preceding gene: 88606905

Following gene: 88606971

Centisome position: 36.58

GC content: 45.1

Gene sequence:

>408_bases
ATGGACTCTGAAGAAAGTAGGTGCTTTTCTGGTTATGATGGAAATAGATTTAAGCTGGTGATTCTTGCAAGTCAGAGAGC
TCACGAGTTAAGCTCGGGCGCAGCGACTCTGGTAGACCGTCAGGGTGATAAGAATACGGTTGTCGCACTGAGGGAGATAG
CGTCCAATCAGTTAGATCTCTCTACCGTATTCGGGTTGGCTGTGCAAAGATGTAGAAAATATCTAGAAGAATTTGCTGGT
TCTCGTGGTATTGCGGGGCACAGCTCCCATGTCTCACCTTCTCGTAGTTCCCGACATACCGGTCTTGGTAAGAGCTTTGT
AGATAATAAGAGCACGTATTCTGCTTCGTTTCTGGATCAGGATAAGTTTCTTTCAGGTGGAAAAGATGATGGTATAGAAG
GTTTCTAA

Upstream 100 bases:

>100_bases
AAAAGAAGAGAAATACTTTCGGCGATACTTCATCAACATATTGCATATGGCGCCTTATGAGGGTATAATTGCGGGTTTGT
TATGTGCTGTATGAAAGAAA

Downstream 100 bases:

>100_bases
AGACCTTCTCCTGTGAGTTATTAGAGGTTGTGCTGCGTCTGTTGTACGTGTGTGGTGTGTGTTTGCATCTTGCTGTCTGA
TTGTAAAAATTTCGTATCAT

Product: DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MDSEESRCFSGYDGNRFKLVILASQRAHELSSGAATLVDRQGDKNTVVALREIASNQLDLSTVFGLAVQRCRKYLEEFAG
SRGIAGHSSHVSPSRSSRHTGLGKSFVDNKSTYSASFLDQDKFLSGGKDDGIEGF

Sequences:

>Translated_135_residues
MDSEESRCFSGYDGNRFKLVILASQRAHELSSGAATLVDRQGDKNTVVALREIASNQLDLSTVFGLAVQRCRKYLEEFAG
SRGIAGHSSHVSPSRSSRHTGLGKSFVDNKSTYSASFLDQDKFLSGGKDDGIEGF
>Mature_135_residues
MDSEESRCFSGYDGNRFKLVILASQRAHELSSGAATLVDRQGDKNTVVALREIASNQLDLSTVFGLAVQRCRKYLEEFAG
SRGIAGHSSHVSPSRSSRHTGLGKSFVDNKSTYSASFLDQDKFLSGGKDDGIEGF

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_ANAPZ (Q2GKJ2)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_505109.1
- STRING:   Q2GKJ2
- GeneID:   3930919
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_0514
- NMPDR:   fig|212042.5.peg.506
- TIGR:   APH_0514
- eggNOG:   NOG78251
- HOGENOM:   HBG750946
- OMA:   ASQRAHE
- ProtClustDB:   PRK00392
- BioCyc:   APHA212042:APH_0514-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14639; Mature: 14639

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSEESRCFSGYDGNRFKLVILASQRAHELSSGAATLVDRQGDKNTVVALREIASNQLDL
CCCCCCCEECCCCCCEEEEEEECCCHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCH
STVFGLAVQRCRKYLEEFAGSRGIAGHSSHVSPSRSSRHTGLGKSFVDNKSTYSASFLDQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCC
DKFLSGGKDDGIEGF
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MDSEESRCFSGYDGNRFKLVILASQRAHELSSGAATLVDRQGDKNTVVALREIASNQLDL
CCCCCCCEECCCCCCEEEEEEECCCHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCH
STVFGLAVQRCRKYLEEFAGSRGIAGHSSHVSPSRSSRHTGLGKSFVDNKSTYSASFLDQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCC
DKFLSGGKDDGIEGF
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA