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The map label for this gene is ydaL [C]

Identifier: 88606971

GI number: 88606971

Start: 536954

End: 537637

Strand: Reverse

Name: ydaL [C]

Synonym: APH_0513

Alternate gene names: 88606971

Gene position: 537637-536954 (Counterclockwise)

Preceding gene: 88607525

Following gene: 88606833

Centisome position: 36.54

GC content: 43.13

Gene sequence:

>684_bases
ATGCGTTTTTCGGGGTTTATCGTGAGTGATGCTGGATGTGAAGACTTGACCGATGCTCTGTGTTGGGAAAGTGTAGAGAA
AGTAGCTCGTCCCCTCGAAAGAAATAACAGGGTTCTTTTCGCACCACAAACGGTGTTTTGCAATACGGAGTGCGAAAGAG
CGCATCATAAAGTATTGCCTACCAATCGTATTTCTAGACCTAGTACACGTCAGATAGTGTATGACAGGTCAGATGTACTG
TTGTCTTCTCTTGATAATGCCAAGGGCCTTGGAGAAAAAAGCGTAGTTAATGCCTCTCAATGCACTGAAGATCAGGGGAT
CCTATCTGCCATAGCGCACAGGATGAAGTTAAAGGTGGACAAGGGAAAGTTTCGTATCGACAATGTTATTGACTTGCACG
GTTATACAACTGATGTCGCTTACGATCTACTAGCAGATTTTATTATAATGAGCTTTCAATCCGCCCATAAGTGCGTCTTG
GTAATTACGGGTTGGGGAAGTAAACAATCTGGAGAAAATGCTTTGCGGAGGAGTTTGTATAAGTGGCTACAAAGCGATAA
AATAGTAAACATGGTTCTTTACTATACGCGTGCTGTTCCCGAGCACGGTGGGAGGGGTGCTTTTTATGTTCTGCTCAGAT
CAAAGCACAAAATATCCAAATTAATGCAACGGACAGAGTTGTAA

Upstream 100 bases:

>100_bases
GTGTGGTGTGTGTTTGCATCTTGCTGTCTGATTGTAAAAATTTCGTATCATAACCTCCTGCTGTTGTGTTTGCCGTGGCT
TAACTGAAAGCTACTGGCGT

Downstream 100 bases:

>100_bases
ATCTATATAGATCCCTAGCCATAGGTAAATTCGCTGTTCTTCGTCCTCAGCGCGTGCTAAACCGTTGGTATTTCACCTAT
AGCCTTACAAACCCAAATTA

Product: Smr domain-containing protein

Products: NA

Alternate protein names: Smr Domain Protein; Smr/MutS Family Protein; Smr/MutS Family DNA Repair Protein; Smr Family Protein; Smr Protein/Muts2-Like; Smr Protein/MutS2 C-Terminal; DNA Repair Protein Smr/MutS Family; Smr Protein; Smr Domain Family Protein

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MRFSGFIVSDAGCEDLTDALCWESVEKVARPLERNNRVLFAPQTVFCNTECERAHHKVLPTNRISRPSTRQIVYDRSDVL
LSSLDNAKGLGEKSVVNASQCTEDQGILSAIAHRMKLKVDKGKFRIDNVIDLHGYTTDVAYDLLADFIIMSFQSAHKCVL
VITGWGSKQSGENALRRSLYKWLQSDKIVNMVLYYTRAVPEHGGRGAFYVLLRSKHKISKLMQRTEL

Sequences:

>Translated_227_residues
MRFSGFIVSDAGCEDLTDALCWESVEKVARPLERNNRVLFAPQTVFCNTECERAHHKVLPTNRISRPSTRQIVYDRSDVL
LSSLDNAKGLGEKSVVNASQCTEDQGILSAIAHRMKLKVDKGKFRIDNVIDLHGYTTDVAYDLLADFIIMSFQSAHKCVL
VITGWGSKQSGENALRRSLYKWLQSDKIVNMVLYYTRAVPEHGGRGAFYVLLRSKHKISKLMQRTEL
>Mature_227_residues
MRFSGFIVSDAGCEDLTDALCWESVEKVARPLERNNRVLFAPQTVFCNTECERAHHKVLPTNRISRPSTRQIVYDRSDVL
LSSLDNAKGLGEKSVVNASQCTEDQGILSAIAHRMKLKVDKGKFRIDNVIDLHGYTTDVAYDLLADFIIMSFQSAHKCVL
VITGWGSKQSGENALRRSLYKWLQSDKIVNMVLYYTRAVPEHGGRGAFYVLLRSKHKISKLMQRTEL

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25697; Mature: 25697

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSGFIVSDAGCEDLTDALCWESVEKVARPLERNNRVLFAPQTVFCNTECERAHHKVLP
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCHHHHHHHCCCC
TNRISRPSTRQIVYDRSDVLLSSLDNAKGLGEKSVVNASQCTEDQGILSAIAHRMKLKVD
CCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCHHHCCHHHCCCHHHHHHHHHHHHHEEEC
KGKFRIDNVIDLHGYTTDVAYDLLADFIIMSFQSAHKCVLVITGWGSKQSGENALRRSLY
CCCEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
KWLQSDKIVNMVLYYTRAVPEHGGRGAFYVLLRSKHKISKLMQRTEL
HHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHCC
>Mature Secondary Structure
MRFSGFIVSDAGCEDLTDALCWESVEKVARPLERNNRVLFAPQTVFCNTECERAHHKVLP
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEECCHHHHHHHCCCC
TNRISRPSTRQIVYDRSDVLLSSLDNAKGLGEKSVVNASQCTEDQGILSAIAHRMKLKVD
CCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCHHHCCHHHCCCHHHHHHHHHHHHHEEEC
KGKFRIDNVIDLHGYTTDVAYDLLADFIIMSFQSAHKCVLVITGWGSKQSGENALRRSLY
CCCEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
KWLQSDKIVNMVLYYTRAVPEHGGRGAFYVLLRSKHKISKLMQRTEL
HHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA