Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 88606961

GI number: 88606961

Start: 240633

End: 241331

Strand: Direct

Name: radC [C]

Synonym: APH_0242

Alternate gene names: 88606961

Gene position: 240633-241331 (Clockwise)

Preceding gene: 88607583

Following gene: 88607528

Centisome position: 16.36

GC content: 42.2

Gene sequence:

>699_bases
ATGCCCGAAAGTAGAGATGCTGAGCGTAAAAGACAGCAGCTAGGTCACCGTGAGCGGCTGCGTCAGAAAATTCTTAATGG
GAATGGTGATGGAGTGTTCGACTATGAAGTATTAGAGCTCCTTCTATGTTCAGTGCGGGGTAGAGTTGACCTCAAGCCAG
TTGCGAAGCGCTTGATGGAGAGATTCGGGAACTTATCGCAGGTGTTGTATGCTGATATTAATGAACTCAGAAAAGTCAAG
GACATGGGTGATTCCTCAGTAGCAATGCTTGTATGTGTTAGAGAAGCGCTGATTAGGGTTATGAGAGGGAATATAACAAG
CTGTGTTATGTTGGATAAGTGGCCTAAACTGATAGATTATCTGAAGGTAAAAATAGGCAACTCCACCATAGAAAACTTTC
TTGTACTCTACCTCAATAAGCGATACAGCCTGATAGCGGATGAAGTACAAAGCACGGGTACAGTAGATGAAACTCCTCTG
TACATTAGGGAGGTAATAAGGAAGGCGTTGCTGTGTGGTGCTGTGTATATTGTGATATCGCACAATCATCCCAGTGGTGA
TCCTAAACCTTCAAAAGCTGATATCAATGTTACAAACAAGCTGCGTATTGCATGCAATAGCATGGATATAGAGTTAGTTG
ATCATGTTATCGTAACTTCGAAACGTCACTATAGTTTTAAGACTCATGGGTTGTTATAA

Upstream 100 bases:

>100_bases
CATGATAAAGAAAGCGTGTGTCATTCTACATCAGAGAAAAAGTTAGTTTATTTTTCGGAAATTTACATACTTATAAATTG
TCACAACATATAGCACCACT

Downstream 100 bases:

>100_bases
GCTATAATGGAGGACTTGACGGGGAATATCATTCAAAGTAGCATGCGTGATTCCTACATTATATATGCAGATTATTCGTG
GATATCGAGTGGCAAATTTC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MPESRDAERKRQQLGHRERLRQKILNGNGDGVFDYEVLELLLCSVRGRVDLKPVAKRLMERFGNLSQVLYADINELRKVK
DMGDSSVAMLVCVREALIRVMRGNITSCVMLDKWPKLIDYLKVKIGNSTIENFLVLYLNKRYSLIADEVQSTGTVDETPL
YIREVIRKALLCGAVYIVISHNHPSGDPKPSKADINVTNKLRIACNSMDIELVDHVIVTSKRHYSFKTHGLL

Sequences:

>Translated_232_residues
MPESRDAERKRQQLGHRERLRQKILNGNGDGVFDYEVLELLLCSVRGRVDLKPVAKRLMERFGNLSQVLYADINELRKVK
DMGDSSVAMLVCVREALIRVMRGNITSCVMLDKWPKLIDYLKVKIGNSTIENFLVLYLNKRYSLIADEVQSTGTVDETPL
YIREVIRKALLCGAVYIVISHNHPSGDPKPSKADINVTNKLRIACNSMDIELVDHVIVTSKRHYSFKTHGLL
>Mature_231_residues
PESRDAERKRQQLGHRERLRQKILNGNGDGVFDYEVLELLLCSVRGRVDLKPVAKRLMERFGNLSQVLYADINELRKVKD
MGDSSVAMLVCVREALIRVMRGNITSCVMLDKWPKLIDYLKVKIGNSTIENFLVLYLNKRYSLIADEVQSTGTVDETPLY
IREVIRKALLCGAVYIVISHNHPSGDPKPSKADINVTNKLRIACNSMDIELVDHVIVTSKRHYSFKTHGLL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=114, Percent_Identity=42.9824561403509, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=27.6995305164319, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788312, Length=114, Percent_Identity=43.859649122807, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI2367100, Length=114, Percent_Identity=40.3508771929825, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26423; Mature: 26292

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPESRDAERKRQQLGHRERLRQKILNGNGDGVFDYEVLELLLCSVRGRVDLKPVAKRLME
CCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHH
RFGNLSQVLYADINELRKVKDMGDSSVAMLVCVREALIRVMRGNITSCVMLDKWPKLIDY
HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHH
LKVKIGNSTIENFLVLYLNKRYSLIADEVQSTGTVDETPLYIREVIRKALLCGAVYIVIS
HHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEEE
HNHPSGDPKPSKADINVTNKLRIACNSMDIELVDHVIVTSKRHYSFKTHGLL
CCCCCCCCCCCCCCCEECCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PESRDAERKRQQLGHRERLRQKILNGNGDGVFDYEVLELLLCSVRGRVDLKPVAKRLME
CCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHH
RFGNLSQVLYADINELRKVKDMGDSSVAMLVCVREALIRVMRGNITSCVMLDKWPKLIDY
HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHH
LKVKIGNSTIENFLVLYLNKRYSLIADEVQSTGTVDETPLYIREVIRKALLCGAVYIVIS
HHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEEE
HNHPSGDPKPSKADINVTNKLRIACNSMDIELVDHVIVTSKRHYSFKTHGLL
CCCCCCCCCCCCCCCEECCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA