| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is linC [H]
Identifier: 87200975
GI number: 87200975
Start: 3180175
End: 3180927
Strand: Direct
Name: linC [H]
Synonym: Saro_2963
Alternate gene names: 87200975
Gene position: 3180175-3180927 (Clockwise)
Preceding gene: 87200974
Following gene: 87200976
Centisome position: 89.29
GC content: 67.07
Gene sequence:
>753_bases ATGATGCGCTTCGATGGAAAGGCAGTCCTCGTGACGGGGGCGGCGACCGGCATCGGCAGGGCCACCGCCCTCGCCTTCGC TCGCGAAGGGGCCTCGGTCATGATCGGCGACATAGACGAGCGGGCAGACGAAACCGTCGCGTTGATCCTCTCGGAGGGCG GGCGCGCTGCCTTCCGCAAGACCGACGTGCGGCGCGCGGCCGACCTGGATGAACTGGTGGCGCAGTGCCTCGACCGGTTC GGGCGGATGGACGCGGCGTTCAACAATGCCGGGGTCCTCCCGCCCCAGCGCCCGATCCACGAAGTGCCCGAGGACGAACT GGACCTCGCGATCGACGTGGACTTCAAGGGCGTCTTCTTCGCGATGCAAGCGGAAATCCGCCATTTCCTCAAAGTCGGCG GCGGTGCCATCGTCAATACCGCCAGCGTCGGCGCGCTGATCGCGGACCCGAACATGAGCGCCTACTGCGCGATGAAGCAC GCGGTATCGGGCCTAACCAAGGCCGCCGCCGTCGAGTACGCGCAAGCCGGCATCCGCGTGAACGCCATCGCCCCGGGCTT CGTCGTCACCCCGATGACCCAGCACTGGGCCGACAGCAACGAGTTCACCCAGATGTTCTTCGCCCAGAACATCTCGGGCC GCGCGGCCCGCCCGGAAGAGATCGCGCCCACCGTTCTGCACCTGTGCTCCGATGGCGCGAGCTTCATCAACGGGGCGACA TTCACCATCGATGGCGGCCAGACCGCTCACTGA
Upstream 100 bases:
>100_bases CGCAGCAGTACGGGCAGGTGAACCGCGAGTTCAACGCGAAGATCAAGCATGCCGTCGATCCAAACGGCATCCTTGCTCCC GGCAAATCGGGGATTGTGTG
Downstream 100 bases:
>100_bases GGAGAAGCAACGATGCGTCGGCTACTTACCGTTCTCCTCCCGGCACTTCTCGCAGCAGGCACCGCACAGGCCAAACCGCT GGAATACAAGGTCATCACGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 250; Mature: 250
Protein sequence:
>250_residues MMRFDGKAVLVTGAATGIGRATALAFAREGASVMIGDIDERADETVALILSEGGRAAFRKTDVRRAADLDELVAQCLDRF GRMDAAFNNAGVLPPQRPIHEVPEDELDLAIDVDFKGVFFAMQAEIRHFLKVGGGAIVNTASVGALIADPNMSAYCAMKH AVSGLTKAAAVEYAQAGIRVNAIAPGFVVTPMTQHWADSNEFTQMFFAQNISGRAARPEEIAPTVLHLCSDGASFINGAT FTIDGGQTAH
Sequences:
>Translated_250_residues MMRFDGKAVLVTGAATGIGRATALAFAREGASVMIGDIDERADETVALILSEGGRAAFRKTDVRRAADLDELVAQCLDRF GRMDAAFNNAGVLPPQRPIHEVPEDELDLAIDVDFKGVFFAMQAEIRHFLKVGGGAIVNTASVGALIADPNMSAYCAMKH AVSGLTKAAAVEYAQAGIRVNAIAPGFVVTPMTQHWADSNEFTQMFFAQNISGRAARPEEIAPTVLHLCSDGASFINGAT FTIDGGQTAH >Mature_250_residues MMRFDGKAVLVTGAATGIGRATALAFAREGASVMIGDIDERADETVALILSEGGRAAFRKTDVRRAADLDELVAQCLDRF GRMDAAFNNAGVLPPQRPIHEVPEDELDLAIDVDFKGVFFAMQAEIRHFLKVGGGAIVNTASVGALIADPNMSAYCAMKH AVSGLTKAAAVEYAQAGIRVNAIAPGFVVTPMTQHWADSNEFTQMFFAQNISGRAARPEEIAPTVLHLCSDGASFINGAT FTIDGGQTAH
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ) [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=34.2629482071713, Blast_Score=120, Evalue=9e-28, Organism=Homo sapiens, GI4504505, Length=255, Percent_Identity=32.156862745098, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=33.7209302325581, Blast_Score=114, Evalue=7e-26, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=32.8063241106719, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=28.5171102661597, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI7705925, Length=262, Percent_Identity=32.0610687022901, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=30.7017543859649, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=29.8387096774194, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI31542939, Length=263, Percent_Identity=29.6577946768061, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=28.8065843621399, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=29.045643153527, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=30.1960784313725, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI40807363, Length=194, Percent_Identity=27.319587628866, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=30.939226519337, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI33667109, Length=213, Percent_Identity=29.1079812206573, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI210032110, Length=200, Percent_Identity=27.5, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=30.3643724696356, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI142976729, Length=226, Percent_Identity=25.6637168141593, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI225579078, Length=206, Percent_Identity=28.6407766990291, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254986, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=36.71875, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=32.3886639676113, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=31.4516129032258, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=33.7448559670782, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=32.2448979591837, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=28.3950617283951, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=32.520325203252, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=32.6612903225806, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=35.2941176470588, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=29.0322580645161, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1787526, Length=248, Percent_Identity=28.6290322580645, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786701, Length=230, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=27.0718232044199, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=36.1111111111111, Blast_Score=128, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=34.0823970037453, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=32.7868852459016, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=31.8181818181818, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=34.0909090909091, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=32.824427480916, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=31.6981132075472, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=32.319391634981, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=33.7121212121212, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=34.7014925373134, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=30.3643724696356, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=31.0756972111554, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=30.8943089430894, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.4393939393939, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=32.319391634981, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=29.6747967479675, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=30.5660377358491, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=33.8403041825095, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.811320754717, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.4528301886792, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=29.8387096774194, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=29.8850574712644, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.5660377358491, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=32.1705426356589, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17568967, Length=240, Percent_Identity=29.1666666666667, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=29.1666666666667, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=28.125, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=30.9701492537313, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.0836653386454, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=28.515625, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=27.8947368421053, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17567345, Length=192, Percent_Identity=28.6458333333333, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=25.1282051282051, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203115, Length=197, Percent_Identity=25.8883248730964, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI115534660, Length=190, Percent_Identity=26.8421052631579, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=255, Percent_Identity=27.843137254902, Blast_Score=87, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=209, Percent_Identity=28.2296650717703, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=25.296442687747, Blast_Score=65, Evalue=8e-12, Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=35.655737704918, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=35.0597609561753, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=31.3725490196078, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=29.9212598425197, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=29.0196078431373, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.0836653386454, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI18859837, Length=252, Percent_Identity=30.1587301587302, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24640492, Length=196, Percent_Identity=29.0816326530612, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=32.5490196078431, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=29.9595141700405, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24644337, Length=258, Percent_Identity=29.8449612403101, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=30.9644670050761, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI21358495, Length=203, Percent_Identity=26.6009852216749, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=29.9019607843137, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=27.4611398963731, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=27.4611398963731, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24581726, Length=194, Percent_Identity=25.7731958762887, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26456; Mature: 26456
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRFDGKAVLVTGAATGIGRATALAFAREGASVMIGDIDERADETVALILSEGGRAAFRK CCEECCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCHHHCCCEEEEEEECCCCHHHHH TDVRRAADLDELVAQCLDRFGRMDAAFNNAGVLPPQRPIHEVPEDELDLAIDVDFKGVFF HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHH AMQAEIRHFLKVGGGAIVNTASVGALIADPNMSAYCAMKHAVSGLTKAAAVEYAQAGIRV HHHHHHHHHHHHCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE NAIAPGFVVTPMTQHWADSNEFTQMFFAQNISGRAARPEEIAPTVLHLCSDGASFINGAT EEECCCEEECCCHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCEE FTIDGGQTAH EEECCCCCCC >Mature Secondary Structure MMRFDGKAVLVTGAATGIGRATALAFAREGASVMIGDIDERADETVALILSEGGRAAFRK CCEECCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCHHHCCCEEEEEEECCCCHHHHH TDVRRAADLDELVAQCLDRFGRMDAAFNNAGVLPPQRPIHEVPEDELDLAIDVDFKGVFF HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHH AMQAEIRHFLKVGGGAIVNTASVGALIADPNMSAYCAMKHAVSGLTKAAAVEYAQAGIRV HHHHHHHHHHHHCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE NAIAPGFVVTPMTQHWADSNEFTQMFFAQNISGRAARPEEIAPTVLHLCSDGASFINGAT EEECCCEEECCCHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCEE FTIDGGQTAH EEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]