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The map label for this gene is 87200866

Identifier: 87200866

GI number: 87200866

Start: 3078375

End: 3078989

Strand: Direct

Name: 87200866

Synonym: Saro_2853

Alternate gene names: NA

Gene position: 3078375-3078989 (Clockwise)

Preceding gene: 87200860

Following gene: 87200867

Centisome position: 86.43

GC content: 66.83

Gene sequence:

>615_bases
ATGAACCGCCGCGCCATGCCCCACACCTTCAGATCGATCCTCGCCGCGGTTGCCGCAACCTGCACTTTTGCCCTGGCCGC
CTGCAACGGCGCGCCGACGGAGAAACCGCCGCTTGAAGGCGCGGCAATCGGCGGCGATTTCACGCTGACGGGCAAGGACG
GACGGCCCGTCCGCTGGTCGGACTTCGCGGGCAAGTATCGCGTGGTCTACTTCGGATACACCTTCTGCCCCGACGTGTGC
CCGCTCGACCTGCAGAACATCGCGCAAGGCCTGCGCCTGTTCGGCAAGGACCACGCGGACCTCGCGGCGAACGTGGTGCC
GGTATTCATCACCATCGATCCGGAGCGCGATACCGCCGAGGTCGTCGGCAAGTATGCGGCAAACTTCGGCCCGAAGGTCG
TGGGCCTGACGGGCACGCCCGCGCAGATCGCGGACGTCGCCAGGAAGTGGGCGGTGTTCTACCAGAAGCGCGACGACGGA
AAGCCCGAAGCCTACCTGATGGACCACAGCCGCGCCGCATACCTGATGGGACCGAAGGGCGACGCGATCGCGCTGCTGCC
GGCGGAGCAGGACGCCAAGGCGGTAGCGGCCGAGCTTGCGAAGTGGGTACATTGA

Upstream 100 bases:

>100_bases
GACAGCATTGATACCTCCTGTTGCGAACCCCCGGCAGCGATTTCGCCTCTGGCCTGGTCGTCTGCGGACTCGCCTCTTGC
AAGGGCACGGTTAGCAGAGC

Downstream 100 bases:

>100_bases
GCCGGGGATGAGCCAGGATCGCTTCTGGGAACGGCCGGTCGCCACGCTCAGCCGCGAACAGTGGGAAGCCCTGTGCGACG
GTTGCGGCAAGTGCTGCCTG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MNRRAMPHTFRSILAAVAATCTFALAACNGAPTEKPPLEGAAIGGDFTLTGKDGRPVRWSDFAGKYRVVYFGYTFCPDVC
PLDLQNIAQGLRLFGKDHADLAANVVPVFITIDPERDTAEVVGKYAANFGPKVVGLTGTPAQIADVARKWAVFYQKRDDG
KPEAYLMDHSRAAYLMGPKGDAIALLPAEQDAKAVAAELAKWVH

Sequences:

>Translated_204_residues
MNRRAMPHTFRSILAAVAATCTFALAACNGAPTEKPPLEGAAIGGDFTLTGKDGRPVRWSDFAGKYRVVYFGYTFCPDVC
PLDLQNIAQGLRLFGKDHADLAANVVPVFITIDPERDTAEVVGKYAANFGPKVVGLTGTPAQIADVARKWAVFYQKRDDG
KPEAYLMDHSRAAYLMGPKGDAIALLPAEQDAKAVAAELAKWVH
>Mature_204_residues
MNRRAMPHTFRSILAAVAATCTFALAACNGAPTEKPPLEGAAIGGDFTLTGKDGRPVRWSDFAGKYRVVYFGYTFCPDVC
PLDLQNIAQGLRLFGKDHADLAANVVPVFITIDPERDTAEVVGKYAANFGPKVVGLTGTPAQIADVARKWAVFYQKRDDG
KPEAYLMDHSRAAYLMGPKGDAIALLPAEQDAKAVAAELAKWVH

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=158, Percent_Identity=37.3417721518987, Blast_Score=121, Evalue=4e-28,
Organism=Homo sapiens, GI281182727, Length=144, Percent_Identity=39.5833333333333, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI281182722, Length=144, Percent_Identity=39.5833333333333, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI281182716, Length=144, Percent_Identity=39.5833333333333, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI153791313, Length=144, Percent_Identity=39.5833333333333, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17531419, Length=142, Percent_Identity=33.8028169014084, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319498, Length=167, Percent_Identity=35.3293413173653, Blast_Score=119, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6319511, Length=163, Percent_Identity=31.9018404907975, Blast_Score=103, Evalue=3e-23,
Organism=Drosophila melanogaster, GI19920710, Length=169, Percent_Identity=37.2781065088757, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21969; Mature: 21969

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRAMPHTFRSILAAVAATCTFALAACNGAPTEKPPLEGAAIGGDFTLTGKDGRPVRWS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEECCCCCCEEEC
DFAGKYRVVYFGYTFCPDVCPLDLQNIAQGLRLFGKDHADLAANVVPVFITIDPERDTAE
CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEEEECCCCCHHH
VVGKYAANFGPKVVGLTGTPAQIADVARKWAVFYQKRDDGKPEAYLMDHSRAAYLMGPKG
HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCC
DAIALLPAEQDAKAVAAELAKWVH
CEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNRRAMPHTFRSILAAVAATCTFALAACNGAPTEKPPLEGAAIGGDFTLTGKDGRPVRWS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEECCCCCCEEEC
DFAGKYRVVYFGYTFCPDVCPLDLQNIAQGLRLFGKDHADLAANVVPVFITIDPERDTAE
CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEEEECCCCCHHH
VVGKYAANFGPKVVGLTGTPAQIADVARKWAVFYQKRDDGKPEAYLMDHSRAAYLMGPKG
HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCC
DAIALLPAEQDAKAVAAELAKWVH
CEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA