Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200452
Identifier: 87200452
GI number: 87200452
Start: 2624046
End: 2625635
Strand: Reverse
Name: 87200452
Synonym: Saro_2439
Alternate gene names: NA
Gene position: 2625635-2624046 (Counterclockwise)
Preceding gene: 87200454
Following gene: 87200451
Centisome position: 73.72
GC content: 64.65
Gene sequence:
>1590_bases GTGAAGACCATCCACGGCCTGTTCCTTGCCGGTTGCAGCGGACTTGCGCTTGCCGGTTGCGGCCCGACCGACATCGCCTC GCCCGGCACCGGCGGCAACGTCATCATCAACCCGTCTCCGACGCCTACGCCGACCGCGACGCCCACTCCGACGCCGACCG TCACTGCGGCTGCCGGCTGCCCGACGATCAGCGACCCGCAGGGCCTGACCGATTCCGGCACGATCACCGGCCCGACCGGA TCCTGGCGCGTTTGCACGCTGCCCTCGACGATCAACAAGTCGATCACCCTGCCCAAGATCGCGGGGCTGCTCTATTCGCT CAACGGCCGCGTCAACGTCGGCAGCGATCTCGGCTTCACCAAGACTTCGGGTGAGGCGAGCGTGACGCTGACCATCGATC CGGGCGTCATCCTGTTCGGAAATACCGGCACGTCGTGGCTCGCCGTCAATCGCGGCAACAAGATCAACGCGGTTGGCACG GCTTCGGCGCCGATCGTCTTTACCAGCCGCGACAACGTGCTCGGCCTCAACACCGAAACCTCGCAGGGGCAGTGGGGCGG CGTCGTGCTGATGGGCCGCGCCAAGATCACCGACTGCGACGCGACCGGCGGCGGCACCGTGACCGGCGGAACCTGCCAGC GCAACACCGAAGGTTCGGCCGACCCGGCGCTGTTCGGCGGCCAGGACGATACCGACAGCTCGGGCTCGATGAAGTACGTG CAGATCCGCTATTCGGGCTACGTGCTGGGTTCGGACAAGGAACTCCAGGCGCTGACCACCGAAGGCGTGGGTTCGGGCAC GACGCTCGAATACATCCAGAGCTACAACAGCTCGGACGACGGCGCGGAATTCTTCGGCGGCGTGGTCAACATGAAGCACT ATGTCGCGGTCGGTGCGGATGACGACAGCCTCGACATCGACACCGGCCTGCGCGGCAACTTCCAGTACCTGCTGCTGATC CAGCGCTCGGGTGCGGGCGACGCGCTGATGGAAATCGACAGCAACGGCGCTTCGACCGAAACCGTCGGCGGTTCGACCTC CGCCGTGTTCCGCCAGAACACCAAGATCGCGAACTTCACCGCGATCCAGTCGGCCGTGTCGAGCAACAACGAATCGAACG ACAAGGCCTCGATCCTGATCCGTGGCAACTCGGACATCACGCTGGCCAACGGCGTGGTCTATTCTCCGAACAACGAGTGC CTGCGCATGGACGACAACGGCATCGTGTCACCGGGCACGGCGGCAACGCTCAAGGCCTACTCGGTGGTGATGAGCTGCAA TTCGACCAAGTACATCGGCAGCACCAACTTCACCGCAACCTCGGTGGGTACCGCGTTCGGTTCGGGTTCGAACAACAACA ACGACGCCTTCACCTCGACGCTGACCGGCGTGTTCATCAACGGCACCGGCGAAGCGGGCGTGACCGCCTACAGCGCCATC GGCAGCCTTTCGAGCTACTTCGACGTGGTGACCTACATTGGCGCCGTCAAGGACAGCTCGGACACCTGGTACGCTGGCTG GACCTGCAACAGCACTGCCGCGAACTTCGGCACCACCAGCACGGACTGCACCTCGCTGCCGACCTCCTGA
Upstream 100 bases:
>100_bases TCTGTCAGGAAACCGCAAACAGGCTGTCACTTTGCACCCCTAGATCACCCCTCGCGACGGCGGGAATCGTCTCCGCCGAT ATCCACATGGGGGATACCAC
Downstream 100 bases:
>100_bases TCGGCCGCCTTTCGCGAACGGGGGGTGGCCGGCGACGGTCGCCCCCTTTCTCGCAAACTTCGCAAAACACATTCCCCAGG GGGGACCGGACAATGATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Lipoprotein; Serine/Threonine Protein Kinase; Cell Surface Receptor IPT/TIG Domain Protein; Secreted Protein; Drug/Metabolite Permease; Non-Specific Serine/Threonine Protein Kinase; Parallel Beta-Helix Repeat Protein
Number of amino acids: Translated: 529; Mature: 529
Protein sequence:
>529_residues MKTIHGLFLAGCSGLALAGCGPTDIASPGTGGNVIINPSPTPTPTATPTPTPTVTAAAGCPTISDPQGLTDSGTITGPTG SWRVCTLPSTINKSITLPKIAGLLYSLNGRVNVGSDLGFTKTSGEASVTLTIDPGVILFGNTGTSWLAVNRGNKINAVGT ASAPIVFTSRDNVLGLNTETSQGQWGGVVLMGRAKITDCDATGGGTVTGGTCQRNTEGSADPALFGGQDDTDSSGSMKYV QIRYSGYVLGSDKELQALTTEGVGSGTTLEYIQSYNSSDDGAEFFGGVVNMKHYVAVGADDDSLDIDTGLRGNFQYLLLI QRSGAGDALMEIDSNGASTETVGGSTSAVFRQNTKIANFTAIQSAVSSNNESNDKASILIRGNSDITLANGVVYSPNNEC LRMDDNGIVSPGTAATLKAYSVVMSCNSTKYIGSTNFTATSVGTAFGSGSNNNNDAFTSTLTGVFINGTGEAGVTAYSAI GSLSSYFDVVTYIGAVKDSSDTWYAGWTCNSTAANFGTTSTDCTSLPTS
Sequences:
>Translated_529_residues MKTIHGLFLAGCSGLALAGCGPTDIASPGTGGNVIINPSPTPTPTATPTPTPTVTAAAGCPTISDPQGLTDSGTITGPTG SWRVCTLPSTINKSITLPKIAGLLYSLNGRVNVGSDLGFTKTSGEASVTLTIDPGVILFGNTGTSWLAVNRGNKINAVGT ASAPIVFTSRDNVLGLNTETSQGQWGGVVLMGRAKITDCDATGGGTVTGGTCQRNTEGSADPALFGGQDDTDSSGSMKYV QIRYSGYVLGSDKELQALTTEGVGSGTTLEYIQSYNSSDDGAEFFGGVVNMKHYVAVGADDDSLDIDTGLRGNFQYLLLI QRSGAGDALMEIDSNGASTETVGGSTSAVFRQNTKIANFTAIQSAVSSNNESNDKASILIRGNSDITLANGVVYSPNNEC LRMDDNGIVSPGTAATLKAYSVVMSCNSTKYIGSTNFTATSVGTAFGSGSNNNNDAFTSTLTGVFINGTGEAGVTAYSAI GSLSSYFDVVTYIGAVKDSSDTWYAGWTCNSTAANFGTTSTDCTSLPTS >Mature_529_residues MKTIHGLFLAGCSGLALAGCGPTDIASPGTGGNVIINPSPTPTPTATPTPTPTVTAAAGCPTISDPQGLTDSGTITGPTG SWRVCTLPSTINKSITLPKIAGLLYSLNGRVNVGSDLGFTKTSGEASVTLTIDPGVILFGNTGTSWLAVNRGNKINAVGT ASAPIVFTSRDNVLGLNTETSQGQWGGVVLMGRAKITDCDATGGGTVTGGTCQRNTEGSADPALFGGQDDTDSSGSMKYV QIRYSGYVLGSDKELQALTTEGVGSGTTLEYIQSYNSSDDGAEFFGGVVNMKHYVAVGADDDSLDIDTGLRGNFQYLLLI QRSGAGDALMEIDSNGASTETVGGSTSAVFRQNTKIANFTAIQSAVSSNNESNDKASILIRGNSDITLANGVVYSPNNEC LRMDDNGIVSPGTAATLKAYSVVMSCNSTKYIGSTNFTATSVGTAFGSGSNNNNDAFTSTLTGVFINGTGEAGVTAYSAI GSLSSYFDVVTYIGAVKDSSDTWYAGWTCNSTAANFGTTSTDCTSLPTS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53937; Mature: 53937
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIHGLFLAGCSGLALAGCGPTDIASPGTGGNVIINPSPTPTPTATPTPTPTVTAAAGC CCCEEEEHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCC PTISDPQGLTDSGTITGPTGSWRVCTLPSTINKSITLPKIAGLLYSLNGRVNVGSDLGFT CCCCCCCCCCCCCEEECCCCCEEEEECCHHCCCCCCHHHHHEEEEECCCCEEECCCCCEE KTSGEASVTLTIDPGVILFGNTGTSWLAVNRGNKINAVGTASAPIVFTSRDNVLGLNTET ECCCCEEEEEEECCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCEEEECCCC SQGQWGGVVLMGRAKITDCDATGGGTVTGGTCQRNTEGSADPALFGGQDDTDSSGSMKYV CCCCCCCEEEECCEEEEECCCCCCCEEECCCCCCCCCCCCCCCEECCCCCCCCCCCEEEE QIRYSGYVLGSDKELQALTTEGVGSGTTLEYIQSYNSSDDGAEFFGGVVNMKHYVAVGAD EEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCC DDSLDIDTGLRGNFQYLLLIQRSGAGDALMEIDSNGASTETVGGSTSAVFRQNTKIANFT CCCEEECCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEECCCCCEEEEECCCCEEHHH AIQSAVSSNNESNDKASILIRGNSDITLANGVVYSPNNECLRMDDNGIVSPGTAATLKAY HHHHHHHCCCCCCCEEEEEEECCCCEEEECCEEECCCCCEEEECCCCCCCCCCHHHEEEE SVVMSCNSTKYIGSTNFTATSVGTAFGSGSNNNNDAFTSTLTGVFINGTGEAGVTAYSAI EEEEECCCCEEECCCCCEEEECCCEECCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHH GSLSSYFDVVTYIGAVKDSSDTWYAGWTCNSTAANFGTTSTDCTSLPTS HHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKTIHGLFLAGCSGLALAGCGPTDIASPGTGGNVIINPSPTPTPTATPTPTPTVTAAAGC CCCEEEEHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCC PTISDPQGLTDSGTITGPTGSWRVCTLPSTINKSITLPKIAGLLYSLNGRVNVGSDLGFT CCCCCCCCCCCCCEEECCCCCEEEEECCHHCCCCCCHHHHHEEEEECCCCEEECCCCCEE KTSGEASVTLTIDPGVILFGNTGTSWLAVNRGNKINAVGTASAPIVFTSRDNVLGLNTET ECCCCEEEEEEECCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCEEEECCCC SQGQWGGVVLMGRAKITDCDATGGGTVTGGTCQRNTEGSADPALFGGQDDTDSSGSMKYV CCCCCCCEEEECCEEEEECCCCCCCEEECCCCCCCCCCCCCCCEECCCCCCCCCCCEEEE QIRYSGYVLGSDKELQALTTEGVGSGTTLEYIQSYNSSDDGAEFFGGVVNMKHYVAVGAD EEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCC DDSLDIDTGLRGNFQYLLLIQRSGAGDALMEIDSNGASTETVGGSTSAVFRQNTKIANFT CCCEEECCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEECCCCCEEEEECCCCEEHHH AIQSAVSSNNESNDKASILIRGNSDITLANGVVYSPNNECLRMDDNGIVSPGTAATLKAY HHHHHHHCCCCCCCEEEEEEECCCCEEEECCEEECCCCCEEEECCCCCCCCCCHHHEEEE SVVMSCNSTKYIGSTNFTATSVGTAFGSGSNNNNDAFTSTLTGVFINGTGEAGVTAYSAI EEEEECCCCEEECCCCCEEEECCCEECCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHH GSLSSYFDVVTYIGAVKDSSDTWYAGWTCNSTAANFGTTSTDCTSLPTS HHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA