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The map label for this gene is rhaS [C]

Identifier: 87200448

GI number: 87200448

Start: 2618189

End: 2619034

Strand: Reverse

Name: rhaS [C]

Synonym: Saro_2435

Alternate gene names: 87200448

Gene position: 2619034-2618189 (Counterclockwise)

Preceding gene: 87200451

Following gene: 87200447

Centisome position: 73.54

GC content: 66.31

Gene sequence:

>846_bases
ATGCGGCCGAGCATCCCAAGCTACGCCCTCTATGGCGAAGGCGCGTCACCAGGCGCTGGCGGTTTCGCGCATATCGAAAC
TATCGCAGAGCGCAGTTCGCTGCATGACTGGGAGATCGGGGTCCATCGCCATGACCATTTCGTACAGATCCTTCTGGTAG
AGGAAGGACATGCCGCGGTGACGGTGGATGGTGCGGTGCATGATCTTGAAGGTCCGGGACGAGTCATCGTCCCTGCAGGC
GCCGTCCACGGCTTCCGCTTCCGCCCCGCGACGCGCGGGTTTGTCCTCACCTTGTCCACCGACTTTTCCACACGCGCGAC
CGCCCCCGGCGATGCGCTTTTGCTGGCCCTTTCGCGCGGTGGGGCCGGACCGCTAACGCCTGCGGGTGCTGAACGGACGT
TCTGGCTGGCGCGGGAGATGCTGGGCCTCCAGCAGGACTGGCAGGAGCGCGATCCGCTGTTCCTGGCGCTTGCCGAGGCG
TTGGTGCGGACCATTGCTCGCGATGTGGCGCCGGGCGGCCTGATGCCTGGCGTCGATCATCGGCTCGACCGGTTTCGCCA
GCTTGTCGAGATGCATTACCGGGAACACCGGGGGCTGGAATTCTACGCGGATGCGCTAGGCATGACACGGCGGACGCTGT
CCCGGCTCACCGCCGCGCATCTGGGCTGCACCCCGCTTGATGTGATCCACCGGCGGATGGCGCTCGAGGCGCATCGGTTG
CTGCGCTACACTAACGCCACCGCGACGCAGGTCGCGGCGGAACTGGGCTTCGACGATCCCTCTTACTTTTCGCGCTTCTA
CCAGCGGACGACCGGCCGTCGCCCCGCGCAGGAGCGGGCGGGATGA

Upstream 100 bases:

>100_bases
ACGCGCCCGCACTGGGAAGCGGGCCAACGGACGCCATGTTGACACGATGCGTGCAAAGGCGGAATGCATGCTCAGGACAA
ACATCTGGTGTTTTCGGGAC

Downstream 100 bases:

>100_bases
AAGTGCCGCTTATCCCCGCTTGCGCCGCGGCGAGCGGTACATGTACGCCTGAATCATTCAGCAATACGGCGAGCGAGGAC
GACCCCGAGTGAACGATTTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; AraC-Family Transcriptional Regulator; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; AraC Family Transcription Regulator; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRPSIPSYALYGEGASPGAGGFAHIETIAERSSLHDWEIGVHRHDHFVQILLVEEGHAAVTVDGAVHDLEGPGRVIVPAG
AVHGFRFRPATRGFVLTLSTDFSTRATAPGDALLLALSRGGAGPLTPAGAERTFWLAREMLGLQQDWQERDPLFLALAEA
LVRTIARDVAPGGLMPGVDHRLDRFRQLVEMHYREHRGLEFYADALGMTRRTLSRLTAAHLGCTPLDVIHRRMALEAHRL
LRYTNATATQVAAELGFDDPSYFSRFYQRTTGRRPAQERAG

Sequences:

>Translated_281_residues
MRPSIPSYALYGEGASPGAGGFAHIETIAERSSLHDWEIGVHRHDHFVQILLVEEGHAAVTVDGAVHDLEGPGRVIVPAG
AVHGFRFRPATRGFVLTLSTDFSTRATAPGDALLLALSRGGAGPLTPAGAERTFWLAREMLGLQQDWQERDPLFLALAEA
LVRTIARDVAPGGLMPGVDHRLDRFRQLVEMHYREHRGLEFYADALGMTRRTLSRLTAAHLGCTPLDVIHRRMALEAHRL
LRYTNATATQVAAELGFDDPSYFSRFYQRTTGRRPAQERAG
>Mature_281_residues
MRPSIPSYALYGEGASPGAGGFAHIETIAERSSLHDWEIGVHRHDHFVQILLVEEGHAAVTVDGAVHDLEGPGRVIVPAG
AVHGFRFRPATRGFVLTLSTDFSTRATAPGDALLLALSRGGAGPLTPAGAERTFWLAREMLGLQQDWQERDPLFLALAEA
LVRTIARDVAPGGLMPGVDHRLDRFRQLVEMHYREHRGLEFYADALGMTRRTLSRLTAAHLGCTPLDVIHRRMALEAHRL
LRYTNATATQVAAELGFDDPSYFSRFYQRTTGRRPAQERAG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30950; Mature: 30950

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSIPSYALYGEGASPGAGGFAHIETIAERSSLHDWEIGVHRHDHFVQILLVEEGHAAV
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEEEEEECCCEEE
TVDGAVHDLEGPGRVIVPAGAVHGFRFRPATRGFVLTLSTDFSTRATAPGDALLLALSRG
EECCCEECCCCCCEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCEEEEEEECC
GAGPLTPAGAERTFWLAREMLGLQQDWQERDPLFLALAEALVRTIARDVAPGGLMPGVDH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
RLDRFRQLVEMHYREHRGLEFYADALGMTRRTLSRLTAAHLGCTPLDVIHRRMALEAHRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRYTNATATQVAAELGFDDPSYFSRFYQRTTGRRPAQERAG
HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MRPSIPSYALYGEGASPGAGGFAHIETIAERSSLHDWEIGVHRHDHFVQILLVEEGHAAV
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEEEEEECCCEEE
TVDGAVHDLEGPGRVIVPAGAVHGFRFRPATRGFVLTLSTDFSTRATAPGDALLLALSRG
EECCCEECCCCCCEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCEEEEEEECC
GAGPLTPAGAERTFWLAREMLGLQQDWQERDPLFLALAEALVRTIARDVAPGGLMPGVDH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
RLDRFRQLVEMHYREHRGLEFYADALGMTRRTLSRLTAAHLGCTPLDVIHRRMALEAHRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRYTNATATQVAAELGFDDPSYFSRFYQRTTGRRPAQERAG
HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA