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The map label for this gene is yegW [H]

Identifier: 87200429

GI number: 87200429

Start: 2590210

End: 2590950

Strand: Reverse

Name: yegW [H]

Synonym: Saro_2416

Alternate gene names: 87200429

Gene position: 2590950-2590210 (Counterclockwise)

Preceding gene: 87200437

Following gene: 87200428

Centisome position: 72.75

GC content: 65.32

Gene sequence:

>741_bases
ATGGCGTCATTTGTTGAACGGGTTGGTCTTCTCCGCCAGGATGTCAGGACGCCCCTGTACCTGCAACTTCAGCAGCTCGT
CCGCCAGGCGATCGAGAACCGCGTTCTCACGCAGGACGACATGATTCCGGCCGAGCGCGACCTTGCGGTCGAATACGGCG
TCTCGCGCATCACCGTGCGCAAGGCGATTGACGGGCTGGCGCAGGAGGGGCTGGTCGTGCGCCGTCGCGGTTCGGGCACG
TTCGTCGCCACCCGCGTGGAAAAGAGCTTCTCCAAGCTGTCGTCCTTCTCGGAAGACATGATCGCCCGGGGCCGCAGGCC
CAGCAGCGAATGGCTTTCCAAGTCTCGCGGCCTTGTCACGCCCGAGGAATCGCTCTCGCTCGGCCTGTCGCCGGGGGCCG
AGGTCTTCCGCTTCCAGCGCCTCCGCTTTGCCGACGAGGTGCCGATGGCGATCGAGTATTCGACCATCGCCGCCCATTGC
CTGCCGGGCATCGATGCGGTCGGGGATTCGCTCTACGCCGCGCTCGAGGCTGTCGGCAATCGTCCTGTCCGCGCGCTGCA
GCGCCTGCGCGCGATGCACTTTCCCGCCGAACAGGCCAAGCGTCTCGGCGTCGACGTCGACCATGCCGGCCTGTTCATCG
AACGTCGCGGTTTCCTCGCTGATGGCGAGGCCGTGGAGTTTACCCAATCGTACTATCGCGGCGACGCTTACGACCTCGTC
GCAGAGTTGAACGCCAGCTAG

Upstream 100 bases:

>100_bases
CTTGCACCGGACCAATATATAACCTATAGCTCCAGTTGTGCTGAGCCAACCTGTCCTCTACCCTTCCGGTGCAATTGCAT
CTTCGGCCGTTGAGGGGTTT

Downstream 100 bases:

>100_bases
AGGCGCGGCGTGCACAAGGAGGGCTGATGACGAGTGTTGAGCTGCATGCCGAGCAATCGGCGATGCGGCGCGAAGCAGCG
GAAGCCGGCACTGCCGTCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MASFVERVGLLRQDVRTPLYLQLQQLVRQAIENRVLTQDDMIPAERDLAVEYGVSRITVRKAIDGLAQEGLVVRRRGSGT
FVATRVEKSFSKLSSFSEDMIARGRRPSSEWLSKSRGLVTPEESLSLGLSPGAEVFRFQRLRFADEVPMAIEYSTIAAHC
LPGIDAVGDSLYAALEAVGNRPVRALQRLRAMHFPAEQAKRLGVDVDHAGLFIERRGFLADGEAVEFTQSYYRGDAYDLV
AELNAS

Sequences:

>Translated_246_residues
MASFVERVGLLRQDVRTPLYLQLQQLVRQAIENRVLTQDDMIPAERDLAVEYGVSRITVRKAIDGLAQEGLVVRRRGSGT
FVATRVEKSFSKLSSFSEDMIARGRRPSSEWLSKSRGLVTPEESLSLGLSPGAEVFRFQRLRFADEVPMAIEYSTIAAHC
LPGIDAVGDSLYAALEAVGNRPVRALQRLRAMHFPAEQAKRLGVDVDHAGLFIERRGFLADGEAVEFTQSYYRGDAYDLV
AELNAS
>Mature_245_residues
ASFVERVGLLRQDVRTPLYLQLQQLVRQAIENRVLTQDDMIPAERDLAVEYGVSRITVRKAIDGLAQEGLVVRRRGSGTF
VATRVEKSFSKLSSFSEDMIARGRRPSSEWLSKSRGLVTPEESLSLGLSPGAEVFRFQRLRFADEVPMAIEYSTIAAHCL
PGIDAVGDSLYAALEAVGNRPVRALQRLRAMHFPAEQAKRLGVDVDHAGLFIERRGFLADGEAVEFTQSYYRGDAYDLVA
ELNAS

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=227, Percent_Identity=35.2422907488987, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1786950, Length=240, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082252, Length=231, Percent_Identity=27.7056277056277, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790118, Length=135, Percent_Identity=30.3703703703704, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790540, Length=209, Percent_Identity=28.2296650717703, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790304, Length=218, Percent_Identity=24.3119266055046, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27349; Mature: 27217

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFVERVGLLRQDVRTPLYLQLQQLVRQAIENRVLTQDDMIPAERDLAVEYGVSRITVR
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHH
KAIDGLAQEGLVVRRRGSGTFVATRVEKSFSKLSSFSEDMIARGRRPSSEWLSKSRGLVT
HHHHHHHHCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
PEESLSLGLSPGAEVFRFQRLRFADEVPMAIEYSTIAAHCLPGIDAVGDSLYAALEAVGN
CHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCC
RPVRALQRLRAMHFPAEQAKRLGVDVDHAGLFIERRGFLADGEAVEFTQSYYRGDAYDLV
CHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHH
AELNAS
HHCCCC
>Mature Secondary Structure 
ASFVERVGLLRQDVRTPLYLQLQQLVRQAIENRVLTQDDMIPAERDLAVEYGVSRITVR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHH
KAIDGLAQEGLVVRRRGSGTFVATRVEKSFSKLSSFSEDMIARGRRPSSEWLSKSRGLVT
HHHHHHHHCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
PEESLSLGLSPGAEVFRFQRLRFADEVPMAIEYSTIAAHCLPGIDAVGDSLYAALEAVGN
CHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCC
RPVRALQRLRAMHFPAEQAKRLGVDVDHAGLFIERRGFLADGEAVEFTQSYYRGDAYDLV
CHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHH
AELNAS
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]