Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200405
Identifier: 87200405
GI number: 87200405
Start: 2557710
End: 2558402
Strand: Reverse
Name: 87200405
Synonym: Saro_2392
Alternate gene names: NA
Gene position: 2558402-2557710 (Counterclockwise)
Preceding gene: 87200408
Following gene: 87200404
Centisome position: 71.83
GC content: 66.96
Gene sequence:
>693_bases ATGGATGCGCTTGAAATCAATGCCTTGTCTTCCCCGATTCAGCGTCGCTCCCTTTTCGGTCTCATGGCAGCGGCGATTCT TCCCTCACTAGCCGCTTGTGCGTCATACGGCCATTCCACAGAAGCCGAAGGCGTGCGCCGCCTCCTCGTGCTTGCATGCA ATCGCGCCTTCGCGCGGATGCGCGGCGACAAGGCCGGATGGAGCCACGCGGCCTTTCGCCTGAAGGCACCACAAGCCCTG CACGACGCCGTGGAACAGGCTCGCGTCGGCGTGGGATCGCAGCCGGGAGGGTTGGACCAGATCGTCAGCAGCCTGACCGC AGAGGTGGCGCTGCCCCGGTTGGAGGAAGTCCTTCGCGAGGCGCTGCGCGCGATCGGCATTCCCGATCCGCAGGCCATAG TTGCCGCAGGCGACCGCGCGGGGACGATCTGGCTGCGCAAGTCGCTCGGCTCGGCGTTTGCGCTGCTGCTGCCCGGCCTG GTGGCAGAGGCTTTCGAACAGGATCGCGGCATCGTCGTGCAGGAGGCGCGACGCATGCTCGACCCTGCGGCGAGCAAATC GCTCGCCGCCGATCTCGCGGTGCAGGCCGAGAGCGCCGTCTGGGCGGCCATCGCCACCGAGGAAGCGGCCATTCGCGCCG ACGTTCGCGGGACGGGTGACCGCGTGATCATGGCCTTGTTCGGGTTGATGTGA
Upstream 100 bases:
>100_bases AGCGGACGCGGGTCGAATTTCCGTCTAGGAAGAGCGCGGGTGCATCACTCATGAAGCTTCAGCCCAAGCTGTCGCTTCCG AACTTCCAAGAGAAGCTCTG
Downstream 100 bases:
>100_bases CCACCTGCGATCGCGGAACCGGGAGTAGCTGCCGCCGTTGCAGTGCTGTCGGGCAGTCGTGCGCAGTTAAGGTTGGGCCG TCTATCGCGCGTTCAACCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MDALEINALSSPIQRRSLFGLMAAAILPSLAACASYGHSTEAEGVRRLLVLACNRAFARMRGDKAGWSHAAFRLKAPQAL HDAVEQARVGVGSQPGGLDQIVSSLTAEVALPRLEEVLREALRAIGIPDPQAIVAAGDRAGTIWLRKSLGSAFALLLPGL VAEAFEQDRGIVVQEARRMLDPAASKSLAADLAVQAESAVWAAIATEEAAIRADVRGTGDRVIMALFGLM
Sequences:
>Translated_230_residues MDALEINALSSPIQRRSLFGLMAAAILPSLAACASYGHSTEAEGVRRLLVLACNRAFARMRGDKAGWSHAAFRLKAPQAL HDAVEQARVGVGSQPGGLDQIVSSLTAEVALPRLEEVLREALRAIGIPDPQAIVAAGDRAGTIWLRKSLGSAFALLLPGL VAEAFEQDRGIVVQEARRMLDPAASKSLAADLAVQAESAVWAAIATEEAAIRADVRGTGDRVIMALFGLM >Mature_230_residues MDALEINALSSPIQRRSLFGLMAAAILPSLAACASYGHSTEAEGVRRLLVLACNRAFARMRGDKAGWSHAAFRLKAPQAL HDAVEQARVGVGSQPGGLDQIVSSLTAEVALPRLEEVLREALRAIGIPDPQAIVAAGDRAGTIWLRKSLGSAFALLLPGL VAEAFEQDRGIVVQEARRMLDPAASKSLAADLAVQAESAVWAAIATEEAAIRADVRGTGDRVIMALFGLM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24214; Mature: 24214
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDALEINALSSPIQRRSLFGLMAAAILPSLAACASYGHSTEAEGVRRLLVLACNRAFARM CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH RGDKAGWSHAAFRLKAPQALHDAVEQARVGVGSQPGGLDQIVSSLTAEVALPRLEEVLRE CCCCCCCCHHHEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ALRAIGIPDPQAIVAAGDRAGTIWLRKSLGSAFALLLPGLVAEAFEQDRGIVVQEARRML HHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DPAASKSLAADLAVQAESAVWAAIATEEAAIRADVRGTGDRVIMALFGLM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC >Mature Secondary Structure MDALEINALSSPIQRRSLFGLMAAAILPSLAACASYGHSTEAEGVRRLLVLACNRAFARM CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH RGDKAGWSHAAFRLKAPQALHDAVEQARVGVGSQPGGLDQIVSSLTAEVALPRLEEVLRE CCCCCCCCHHHEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ALRAIGIPDPQAIVAAGDRAGTIWLRKSLGSAFALLLPGLVAEAFEQDRGIVVQEARRML HHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DPAASKSLAADLAVQAESAVWAAIATEEAAIRADVRGTGDRVIMALFGLM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA