Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200398
Identifier: 87200398
GI number: 87200398
Start: 2547384
End: 2548166
Strand: Reverse
Name: 87200398
Synonym: Saro_2385
Alternate gene names: NA
Gene position: 2548166-2547384 (Counterclockwise)
Preceding gene: 87200399
Following gene: 87200397
Centisome position: 71.55
GC content: 68.2
Gene sequence:
>783_bases ATGTGCTTGGTTGATACGCCCAGGAAACGTCAGGGGGGCGTAAGGACCTTTGCTGCCGGGATGGCTGCACTGGCGGGCGT CATGCTCGCGGGGAGCGCGGTCGCGCAATCGGTCGTCGTGCGATCGACCGGGCCTTCGGCGGCGACCTATCCGCAGGGCA GGAAACTGGCGGCCAACGCTTCGGTCGTGCTCAAGGCGGGCGATCATGTGACGGTGCTGGACAAGGCCGGGACGCGGGTG CTTTCCGGACCTGGCACGTTCACGCTGAACGGCGCGGTGAACCGCGACCAGAGCGGTGGCGGAACGGCTCTGGCTGCCAT GATGACGCGAGGTGCGGGCGCACGGACGCGCACGGGGGCGGTGCGCGGGGCGCCGACGGGGCCTGTTGCGGCCCCTTCGG GACCGGAGAACGTATGGTACATCGACGTCAGCAAGGGCGGCACCTATTGCGTGGCCGACCCGGCGACGCTGGTGCTGTGG CGGCCGGAAAGGACCGATGAAGGCACTGGCAAGCTCTTGTCCCAGGACGGGAGCATGGCCGATCTGACCTGGCGGGCGGG TAGCGCGCTCAAGGTTTGGCCTGCCGCCACCGTGCCTGTGGTCGACGGACAGACCTACACATTCAGCAACGCGGTCGGGA AGCCGGTCAAGATCAGGACCATGGTGCTGCCCAGCGTGCCCGAGGACGAGGTGGAGGTCGCCGCGGCGATGGCGGCGAAG GGATGCAACGCCCAGCTCGACCTGCTGGCAAACCTCGCTTCTGCGGAACAGTCTGGCGGCTGA
Upstream 100 bases:
>100_bases GTGCAGGCCCTCACAGACAAGATCCTCGAATCGGCGCACAACGACGATGCGATGATGAACCTGATCCAGAGACTGCGTCA GACGCACAAGGGAGAGAGTT
Downstream 100 bases:
>100_bases GGTCGGGGACGGGTGATGGAAGGATTGCGGATGGTGCGCGGATTTGTGATGGCGGTGGTCCTGGCTGCCGGCGGGGGCGT TTCGGCCCAGGCGCTTGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MCLVDTPRKRQGGVRTFAAGMAALAGVMLAGSAVAQSVVVRSTGPSAATYPQGRKLAANASVVLKAGDHVTVLDKAGTRV LSGPGTFTLNGAVNRDQSGGGTALAAMMTRGAGARTRTGAVRGAPTGPVAAPSGPENVWYIDVSKGGTYCVADPATLVLW RPERTDEGTGKLLSQDGSMADLTWRAGSALKVWPAATVPVVDGQTYTFSNAVGKPVKIRTMVLPSVPEDEVEVAAAMAAK GCNAQLDLLANLASAEQSGG
Sequences:
>Translated_260_residues MCLVDTPRKRQGGVRTFAAGMAALAGVMLAGSAVAQSVVVRSTGPSAATYPQGRKLAANASVVLKAGDHVTVLDKAGTRV LSGPGTFTLNGAVNRDQSGGGTALAAMMTRGAGARTRTGAVRGAPTGPVAAPSGPENVWYIDVSKGGTYCVADPATLVLW RPERTDEGTGKLLSQDGSMADLTWRAGSALKVWPAATVPVVDGQTYTFSNAVGKPVKIRTMVLPSVPEDEVEVAAAMAAK GCNAQLDLLANLASAEQSGG >Mature_260_residues MCLVDTPRKRQGGVRTFAAGMAALAGVMLAGSAVAQSVVVRSTGPSAATYPQGRKLAANASVVLKAGDHVTVLDKAGTRV LSGPGTFTLNGAVNRDQSGGGTALAAMMTRGAGARTRTGAVRGAPTGPVAAPSGPENVWYIDVSKGGTYCVADPATLVLW RPERTDEGTGKLLSQDGSMADLTWRAGSALKVWPAATVPVVDGQTYTFSNAVGKPVKIRTMVLPSVPEDEVEVAAAMAAK GCNAQLDLLANLASAEQSGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26336; Mature: 26336
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCLVDTPRKRQGGVRTFAAGMAALAGVMLAGSAVAQSVVVRSTGPSAATYPQGRKLAANA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHEEEEECCCCCCCCCCCCCEEECCC SVVLKAGDHVTVLDKAGTRVLSGPGTFTLNGAVNRDQSGGGTALAAMMTRGAGARTRTGA EEEEECCCEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC VRGAPTGPVAAPSGPENVWYIDVSKGGTYCVADPATLVLWRPERTDEGTGKLLSQDGSMA CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCEECCCCCEE DLTWRAGSALKVWPAATVPVVDGQTYTFSNAVGKPVKIRTMVLPSVPEDEVEVAAAMAAK EEEECCCCEEEECCCCEEEEECCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC GCNAQLDLLANLASAEQSGG CCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MCLVDTPRKRQGGVRTFAAGMAALAGVMLAGSAVAQSVVVRSTGPSAATYPQGRKLAANA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHEEEEECCCCCCCCCCCCCEEECCC SVVLKAGDHVTVLDKAGTRVLSGPGTFTLNGAVNRDQSGGGTALAAMMTRGAGARTRTGA EEEEECCCEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC VRGAPTGPVAAPSGPENVWYIDVSKGGTYCVADPATLVLWRPERTDEGTGKLLSQDGSMA CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCEECCCCCEE DLTWRAGSALKVWPAATVPVVDGQTYTFSNAVGKPVKIRTMVLPSVPEDEVEVAAAMAAK EEEECCCCEEEECCCCEEEEECCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC GCNAQLDLLANLASAEQSGG CCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA