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The map label for this gene is ybiS [C]

Identifier: 87199978

GI number: 87199978

Start: 2079602

End: 2080741

Strand: Reverse

Name: ybiS [C]

Synonym: Saro_1961

Alternate gene names: 87199978

Gene position: 2080741-2079602 (Counterclockwise)

Preceding gene: 87199979

Following gene: 87199977

Centisome position: 58.42

GC content: 63.95

Gene sequence:

>1140_bases
ATGTTACGCCACACAGCTGCCGCGCTCGCCATCCTAGCCCTTGCCGCTTGCCAATCGGAGAAGTCGGACCCCGCTCCCGA
TAAAAGCGCGGCAGCGCAGCCAGCGAAGCCAGCGTTCGTCGTGCCCATGGCTTCGAGCGATCCTGCGCCCGGCCAGCCCG
CACCGGCCGAGGACATGCCGCGGCCGGTGATGCAGGCACAGGTCGTACTCGAACGGCTTGGCTTTGCGCCCGGGATCATC
GACGGCAAGGAAGGACTGAGCACTCGAAACGCGGTCCAAGGGTTCCAGGAAGCCAATGGCATTGCCGTCTCTGGCAATTT
CGATCGCGCCACGATGCAGGCGCTCGCCCGCTGGTCCAACATACCCGCCACCCGCCTGGTCACCATCCCGGACGATTTCG
CGCACGGTCCGTTCGCGCCGTTGCCAAAGGAACCTGCAGCCCAGGCGAAGCTGAAGGCTTTGGGCTACGCCTCGCTCGAG
GAAAAGCTCGCCGAGCGCTTTCATACTACGCCTGAAGTGCTGCGCGCTCTCAACGCACCTCCGGTGCAGCAGCCGATTGC
GTCAAGCGCTGCGGTGGAGGCAACGAGGCGAACGCCGGTGATCTATCGTGCGGGCCAGCAGATCAGGGTTCCGAATGTCG
GCGCCGATGCCATCGATCCTGTGGCGGTCGGGGACCAGGGCGCACTCGAAACCATGGCTTCGCTCGGCGTCGGTTCGAAC
CAGCCCAAGGCGGGGCGCATCGTTGTGAGTGAACACGCGGGGACGCTGAAAGCCTTCGACGCATCGAACAAGCTTGTCGC
GCTTTTCACCGTCACCACCGGTTCCGAACACGATCCGCTGCCGTTGGGGAACTGGAAGATCTACTCTTCCTCGTTCAATC
CTCATTTCCGTTATGACGCCAGCCTGTTCTGGGACGTCCCCGACAGCAAGGGCGAGCATCTCCTGCCGCCGGGGCCCAAT
GGACCGGTGGGTGTAGTGTGGATCGACCTGTCGAAGGAGCACTATGGCATACATGGCACCCCGGAGCCGCAGACCATCGG
CCGGACGGAAAGCCACGGCTGCGTCCGCCTCACCAATTGGGATGCCGCGCGGCTCGCGCTCATGGTCGACGGCGCGACGA
AGGTTTCATTCGTAAGGTGA

Upstream 100 bases:

>100_bases
TTCGACGCAATCCGCGCAAACCCGCGCATCACCGAGCAATAAGTCGAGGAACGTCGGGCAGCGCAAAGGATTGATCCGGA
GCACAAGTTCCGGAGTTTCG

Downstream 100 bases:

>100_bases
TGGGCCTTCCCACTTTGGTCCCGCCGTGCCAGACAGGCGCCTTGTCGCGATAACAGGCGGAGCAGGCATGACTACAGGTT
CGGGACCCCGGGAACTGACG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: Spore protein YkuD homolog [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MLRHTAAALAILALAACQSEKSDPAPDKSAAAQPAKPAFVVPMASSDPAPGQPAPAEDMPRPVMQAQVVLERLGFAPGII
DGKEGLSTRNAVQGFQEANGIAVSGNFDRATMQALARWSNIPATRLVTIPDDFAHGPFAPLPKEPAAQAKLKALGYASLE
EKLAERFHTTPEVLRALNAPPVQQPIASSAAVEATRRTPVIYRAGQQIRVPNVGADAIDPVAVGDQGALETMASLGVGSN
QPKAGRIVVSEHAGTLKAFDASNKLVALFTVTTGSEHDPLPLGNWKIYSSSFNPHFRYDASLFWDVPDSKGEHLLPPGPN
GPVGVVWIDLSKEHYGIHGTPEPQTIGRTESHGCVRLTNWDAARLALMVDGATKVSFVR

Sequences:

>Translated_379_residues
MLRHTAAALAILALAACQSEKSDPAPDKSAAAQPAKPAFVVPMASSDPAPGQPAPAEDMPRPVMQAQVVLERLGFAPGII
DGKEGLSTRNAVQGFQEANGIAVSGNFDRATMQALARWSNIPATRLVTIPDDFAHGPFAPLPKEPAAQAKLKALGYASLE
EKLAERFHTTPEVLRALNAPPVQQPIASSAAVEATRRTPVIYRAGQQIRVPNVGADAIDPVAVGDQGALETMASLGVGSN
QPKAGRIVVSEHAGTLKAFDASNKLVALFTVTTGSEHDPLPLGNWKIYSSSFNPHFRYDASLFWDVPDSKGEHLLPPGPN
GPVGVVWIDLSKEHYGIHGTPEPQTIGRTESHGCVRLTNWDAARLALMVDGATKVSFVR
>Mature_379_residues
MLRHTAAALAILALAACQSEKSDPAPDKSAAAQPAKPAFVVPMASSDPAPGQPAPAEDMPRPVMQAQVVLERLGFAPGII
DGKEGLSTRNAVQGFQEANGIAVSGNFDRATMQALARWSNIPATRLVTIPDDFAHGPFAPLPKEPAAQAKLKALGYASLE
EKLAERFHTTPEVLRALNAPPVQQPIASSAAVEATRRTPVIYRAGQQIRVPNVGADAIDPVAVGDQGALETMASLGVGSN
QPKAGRIVVSEHAGTLKAFDASNKLVALFTVTTGSEHDPLPLGNWKIYSSSFNPHFRYDASLFWDVPDSKGEHLLPPGPN
GPVGVVWIDLSKEHYGIHGTPEPQTIGRTESHGCVRLTNWDAARLALMVDGATKVSFVR

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 40104; Mature: 40104

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRHTAAALAILALAACQSEKSDPAPDKSAAAQPAKPAFVVPMASSDPAPGQPAPAEDMP
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCC
RPVMQAQVVLERLGFAPGIIDGKEGLSTRNAVQGFQEANGIAVSGNFDRATMQALARWSN
HHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCC
IPATRLVTIPDDFAHGPFAPLPKEPAAQAKLKALGYASLEEKLAERFHTTPEVLRALNAP
CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHCCCC
PVQQPIASSAAVEATRRTPVIYRAGQQIRVPNVGADAIDPVAVGDQGALETMASLGVGSN
CCHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCCCCCCCEEECCCHHHHHHHHHCCCCC
QPKAGRIVVSEHAGTLKAFDASNKLVALFTVTTGSEHDPLPLGNWKIYSSSFNPHFRYDA
CCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEECC
SLFWDVPDSKGEHLLPPGPNGPVGVVWIDLSKEHYGIHGTPEPQTIGRTESHGCVRLTNW
EEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC
DAARLALMVDGATKVSFVR
CCEEEEEEECCCCEEEEEC
>Mature Secondary Structure
MLRHTAAALAILALAACQSEKSDPAPDKSAAAQPAKPAFVVPMASSDPAPGQPAPAEDMP
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCC
RPVMQAQVVLERLGFAPGIIDGKEGLSTRNAVQGFQEANGIAVSGNFDRATMQALARWSN
HHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCC
IPATRLVTIPDDFAHGPFAPLPKEPAAQAKLKALGYASLEEKLAERFHTTPEVLRALNAP
CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHCCCC
PVQQPIASSAAVEATRRTPVIYRAGQQIRVPNVGADAIDPVAVGDQGALETMASLGVGSN
CCHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCCCCCCCEEECCCHHHHHHHHHCCCCC
QPKAGRIVVSEHAGTLKAFDASNKLVALFTVTTGSEHDPLPLGNWKIYSSSFNPHFRYDA
CCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEECC
SLFWDVPDSKGEHLLPPGPNGPVGVVWIDLSKEHYGIHGTPEPQTIGRTESHGCVRLTNW
EEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC
DAARLALMVDGATKVSFVR
CCEEEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA