Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is murI [H]
Identifier: 87199816
GI number: 87199816
Start: 1896831
End: 1897664
Strand: Reverse
Name: murI [H]
Synonym: Saro_1799
Alternate gene names: 87199816
Gene position: 1897664-1896831 (Counterclockwise)
Preceding gene: 87199821
Following gene: 87199815
Centisome position: 53.28
GC content: 70.14
Gene sequence:
>834_bases ATGACGGGAACGGGCACAGTTGCGAACCAAGCGGCCACGGTCGATCCGGGAGCGCCGCTGCTCCTGTTCGATTCGGGCGT TGGCGGGCTTTCGGTGCTGCGCAAGGTGCGGGCCGTGCTGCCCGAGGCTCCGGTCATCTACGTCGCCGACAACGCCGGCC TTCCCTATGGCGCGAAGACCGAAGCGCAGATCGCCGCGCGCGTCTCGGGTCTGCTCGGCCGACTGACGGAACGGCTGGCG CCCCGCCTGGTGTGCATCGCCTGCAATACGGCGTCGACCATTGCCCTGGCATCGGTCCGCGAAGTGCTGGAAGTGCCGAT CGTTGGCACCGTTCCGGCGATCAAGCCTGCCGCCGCGCTTACCCGCACCGGCGTCATCGGGCTTCTTGGCACCGAAGCGA CGATCCGGCAGGCCTATGTCGACCGGCTCGAGGCGGAGTTCGCCGCCGACAAGCACCTGCTGCGCCACGGCGCGCCCGAA CTCGTAGCCGCGGCCGAAGCCAAGCTGCGCGGCGAACGGGTCGATCCGGCCGTCTATGCCCGGGCCGCAGCGGCCCTGCG CGCGATGCCCGGCGGAGACCGGATCGACACGGTGGTGCTTGCCTGTACGCACTTCCCGCTGGTCGAGGACGAATTGCGCG AAGCCTTCGGGCCGGAAGTCCGGTTCGTCGACGGATCGGACGGCATTGCCCGCCGCATCGCCCACCTCACGCAGGGACAG GCCTGGCGCAGGACGGAACCCGACCTCGCGCTGTTCACGCGCGGCGGCGAGGACGTCGACCGGCTCGGCCCCGCGCTTGC AGCGCACGGGCTTGGCCGCATCGGGATATTCTGA
Upstream 100 bases:
>100_bases AGGCAAGAGCGTTTCCACGCCGCACTCCATACCCAATCCGACGAGAAAAGCGAAAGAGGGCTGTTTCCATTTTGCCCCCA TTACCGATACAAGCCGGGCG
Downstream 100 bases:
>100_bases CGGTGGGGGCCGTTCAATGAGTCGCTTTTCCAGGATCGTCGTTGCTTTCCTCATCTTGCTTGCGGCGGCCTACTACTGGC TCCTGGTCAACCGGGGGCAA
Product: glutamate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MTGTGTVANQAATVDPGAPLLLFDSGVGGLSVLRKVRAVLPEAPVIYVADNAGLPYGAKTEAQIAARVSGLLGRLTERLA PRLVCIACNTASTIALASVREVLEVPIVGTVPAIKPAAALTRTGVIGLLGTEATIRQAYVDRLEAEFAADKHLLRHGAPE LVAAAEAKLRGERVDPAVYARAAAALRAMPGGDRIDTVVLACTHFPLVEDELREAFGPEVRFVDGSDGIARRIAHLTQGQ AWRRTEPDLALFTRGGEDVDRLGPALAAHGLGRIGIF
Sequences:
>Translated_277_residues MTGTGTVANQAATVDPGAPLLLFDSGVGGLSVLRKVRAVLPEAPVIYVADNAGLPYGAKTEAQIAARVSGLLGRLTERLA PRLVCIACNTASTIALASVREVLEVPIVGTVPAIKPAAALTRTGVIGLLGTEATIRQAYVDRLEAEFAADKHLLRHGAPE LVAAAEAKLRGERVDPAVYARAAAALRAMPGGDRIDTVVLACTHFPLVEDELREAFGPEVRFVDGSDGIARRIAHLTQGQ AWRRTEPDLALFTRGGEDVDRLGPALAAHGLGRIGIF >Mature_276_residues TGTGTVANQAATVDPGAPLLLFDSGVGGLSVLRKVRAVLPEAPVIYVADNAGLPYGAKTEAQIAARVSGLLGRLTERLAP RLVCIACNTASTIALASVREVLEVPIVGTVPAIKPAAALTRTGVIGLLGTEATIRQAYVDRLEAEFAADKHLLRHGAPEL VAAAEAKLRGERVDPAVYARAAAALRAMPGGDRIDTVVLACTHFPLVEDELREAFGPEVRFVDGSDGIARRIAHLTQGQA WRRTEPDLALFTRGGEDVDRLGPALAAHGLGRIGIF
Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]
COG id: COG0796
COG function: function code M; Glutamate racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family [H]
Homologues:
Organism=Escherichia coli, GI87082355, Length=259, Percent_Identity=40.9266409266409, Blast_Score=170, Evalue=1e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004391 [H]
Pfam domain/function: PF01177 Asp_Glu_race [H]
EC number: =5.1.1.3 [H]
Molecular weight: Translated: 28984; Mature: 28853
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: PS00924 ASP_GLU_RACEMASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTGTVANQAATVDPGAPLLLFDSGVGGLSVLRKVRAVLPEAPVIYVADNAGLPYGAKT CCCCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC EAQIAARVSGLLGRLTERLAPRLVCIACNTASTIALASVREVLEVPIVGTVPAIKPAAAL HHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH TRTGVIGLLGTEATIRQAYVDRLEAEFAADKHLLRHGAPELVAAAEAKLRGERVDPAVYA HHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH RAAAALRAMPGGDRIDTVVLACTHFPLVEDELREAFGPEVRFVDGSDGIARRIAHLTQGQ HHHHHHHCCCCCCHHHHHEEHHHCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC AWRRTEPDLALFTRGGEDVDRLGPALAAHGLGRIGIF CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TGTGTVANQAATVDPGAPLLLFDSGVGGLSVLRKVRAVLPEAPVIYVADNAGLPYGAKT CCCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC EAQIAARVSGLLGRLTERLAPRLVCIACNTASTIALASVREVLEVPIVGTVPAIKPAAAL HHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH TRTGVIGLLGTEATIRQAYVDRLEAEFAADKHLLRHGAPELVAAAEAKLRGERVDPAVYA HHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH RAAAALRAMPGGDRIDTVVLACTHFPLVEDELREAFGPEVRFVDGSDGIARRIAHLTQGQ HHHHHHHCCCCCCHHHHHEEHHHCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC AWRRTEPDLALFTRGGEDVDRLGPALAAHGLGRIGIF CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA