Click here to switch to the map view.

The map label for this gene is ypfJ [H]

Identifier: 87199766

GI number: 87199766

Start: 1843203

End: 1844057

Strand: Reverse

Name: ypfJ [H]

Synonym: Saro_1749

Alternate gene names: 87199766

Gene position: 1844057-1843203 (Counterclockwise)

Preceding gene: 87199772

Following gene: 87199765

Centisome position: 51.78

GC content: 64.33

Gene sequence:

>855_bases
ATGCGTCTCGACGATTTCGACAATTCCATCAATGTCGAAGACCAGCGCGGAGGGCGCTTTCCACTCGGCGGAGGGGGCAA
GCTCGGCTGCGGCTCGATTGTCATCGCGCTGATCGCCGCGCTCGTTTTCGGTGTGGACCCGGCGCAGATGCTCGGCTCCC
TCCAGCAAGTCCAGACGAGCGCGCCGGTGGAGCAGCAGGGCGGCACCTCCGCTTCCGAAAGCTGCACCGTCAACGAATTC
AGCCGCGAGAGCTGCAACGCCCTGTCCTCGCTCAACAAGACCTGGGGACCGCTGTTCCAGCAGGCCAACATCCCGTTCAA
CGCACCCAAGCTGGTGTTCTATTCGCAGGCTGGCCAATCCGGCTGCGGCGCGGCGCAGAGCGCGATGGGGCCGTTCTATT
GCCCGAGCGACGCGGGCATCTACATCGACACCGACTTCTATACGGAAATGGACCGCCAGATGGGCGCGGGCGGCGATTTC
GCGCGCGTCTATGTGATGGCGCACGAATATGGCCACCACATCCAGAACCTGCTCGGCACCTCGGACAAGGTCCGCCAGCT
CCAGCAGCGCAGCCCCAGCCAGGCCAACCAGCTCTCCGTCCGGCTCGAACTCCAGGCAGATTGCTACGCGGGCGTCTGGG
CAGGCCGCAACCGCGACAGGATCGAGGCGGGCGATATCGAGGAAGGCATGCGCGCCGCGCACCAGATCGGTGACGACACA
CTGATGAAGGCGGCAGGCCGCCGCCCGGTAGAGGAAGCCTTCACCCATGGCAGTTCCGCCCAGCGAATGCAGTGGCTGCG
CAAGGGCCTCGAAACAGGCGACGAGGATCAGTGCGATACGTTCACTGATCTTTAA

Upstream 100 bases:

>100_bases
AACATTCGCCAACTCCGGAGATTCTGGATAGGTAGATCGGATTGGCATCGCGGGCGAAGTCGCGCTTGTCCAGTCGCAAA
TAGGTATGAAGGGGCATGCA

Downstream 100 bases:

>100_bases
TGCGACTTCAAGGAACCCGATCGAGCCTTCCAGCGTAACCGGAAGACAGGGGATTTACTGATGCTGTCCAAGGCTCTTCG
GTTCGCAACAACGATAATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MRLDDFDNSINVEDQRGGRFPLGGGGKLGCGSIVIALIAALVFGVDPAQMLGSLQQVQTSAPVEQQGGTSASESCTVNEF
SRESCNALSSLNKTWGPLFQQANIPFNAPKLVFYSQAGQSGCGAAQSAMGPFYCPSDAGIYIDTDFYTEMDRQMGAGGDF
ARVYVMAHEYGHHIQNLLGTSDKVRQLQQRSPSQANQLSVRLELQADCYAGVWAGRNRDRIEAGDIEEGMRAAHQIGDDT
LMKAAGRRPVEEAFTHGSSAQRMQWLRKGLETGDEDQCDTFTDL

Sequences:

>Translated_284_residues
MRLDDFDNSINVEDQRGGRFPLGGGGKLGCGSIVIALIAALVFGVDPAQMLGSLQQVQTSAPVEQQGGTSASESCTVNEF
SRESCNALSSLNKTWGPLFQQANIPFNAPKLVFYSQAGQSGCGAAQSAMGPFYCPSDAGIYIDTDFYTEMDRQMGAGGDF
ARVYVMAHEYGHHIQNLLGTSDKVRQLQQRSPSQANQLSVRLELQADCYAGVWAGRNRDRIEAGDIEEGMRAAHQIGDDT
LMKAAGRRPVEEAFTHGSSAQRMQWLRKGLETGDEDQCDTFTDL
>Mature_284_residues
MRLDDFDNSINVEDQRGGRFPLGGGGKLGCGSIVIALIAALVFGVDPAQMLGSLQQVQTSAPVEQQGGTSASESCTVNEF
SRESCNALSSLNKTWGPLFQQANIPFNAPKLVFYSQAGQSGCGAAQSAMGPFYCPSDAGIYIDTDFYTEMDRQMGAGGDF
ARVYVMAHEYGHHIQNLLGTSDKVRQLQQRSPSQANQLSVRLELQADCYAGVWAGRNRDRIEAGDIEEGMRAAHQIGDDT
LMKAAGRRPVEEAFTHGSSAQRMQWLRKGLETGDEDQCDTFTDL

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=295, Percent_Identity=43.0508474576271, Blast_Score=230, Evalue=8e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 30791; Mature: 30791

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDDFDNSINVEDQRGGRFPLGGGGKLGCGSIVIALIAALVFGVDPAQMLGSLQQVQTS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
APVEQQGGTSASESCTVNEFSRESCNALSSLNKTWGPLFQQANIPFNAPKLVFYSQAGQS
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
GCGAAQSAMGPFYCPSDAGIYIDTDFYTEMDRQMGAGGDFARVYVMAHEYGHHIQNLLGT
CCCHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCC
SDKVRQLQQRSPSQANQLSVRLELQADCYAGVWAGRNRDRIEAGDIEEGMRAAHQIGDDT
CHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHH
LMKAAGRRPVEEAFTHGSSAQRMQWLRKGLETGDEDQCDTFTDL
HHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHCCC
>Mature Secondary Structure
MRLDDFDNSINVEDQRGGRFPLGGGGKLGCGSIVIALIAALVFGVDPAQMLGSLQQVQTS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
APVEQQGGTSASESCTVNEFSRESCNALSSLNKTWGPLFQQANIPFNAPKLVFYSQAGQS
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
GCGAAQSAMGPFYCPSDAGIYIDTDFYTEMDRQMGAGGDFARVYVMAHEYGHHIQNLLGT
CCCHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCC
SDKVRQLQQRSPSQANQLSVRLELQADCYAGVWAGRNRDRIEAGDIEEGMRAAHQIGDDT
CHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHH
LMKAAGRRPVEEAFTHGSSAQRMQWLRKGLETGDEDQCDTFTDL
HHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]