Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is prmA [H]
Identifier: 87199759
GI number: 87199759
Start: 1836751
End: 1837707
Strand: Reverse
Name: prmA [H]
Synonym: Saro_1742
Alternate gene names: 87199759
Gene position: 1837707-1836751 (Counterclockwise)
Preceding gene: 87199760
Following gene: 87199758
Centisome position: 51.6
GC content: 71.26
Gene sequence:
>957_bases ATGAGCTGGAAAGTTACCGTGTTCGCGCCGCGCGACGAGGTCCAGGCGGCGCTCGTCGCGCATGAGGACGCGTGGGACTG GGACCACGACATCGTCATCGCCGGCAGCGAGATCGCGGAGGACAAGCCGGAGGACTGGCAGCTCGAGGCGTGGCTCGACC GCAAGCCGACCAAGGCCGACCGGAACGCGATCGCGGACCTGTTCGAGGGCGCACCGCCCAAACTGAACGTCGAGAAGCTG CCGGACGCCGACTGGGTCACGCTCAGCCAGCAAGGCGTCGAGCCGATCCGCGAGGGCGCCTTCCACGTCCACACACCCGA GTACCCGCCACTGGCGCAAGCCGGCGTGCGCGACTTCGTGATCCCCGCAAGCCAGGCGTTCGGCACCGGCCAGCACGCGA CGACCGCGGGGTGCCTGGCGATGCTGACCCACATGAAGCGGCAGGGCATCCTGGTGCGCAACCTTGCGGACATCGGCACC GGCACAGGCCTGCTCGCCTTCGCCGGCCTGCACCTGTGGCCCTCCGCCCGCGCCATCGCCAGCGACATCGACGCGGTCTG CGGGCCGGTGGTGGCGGAGAACGCGGCCAACAACGGCATTGCACTGGGCGACGGACCGGGGCGCATGGCCATGGTCATCG CGGCCGGCATGGAGCATCCGCTGTTGCAGGCGGCCGGACCATACGACCTGCTCATCGCCAACATCCTGGCGGGGCCGCTC GTCGAACTGGCCCCCGAGTTCGCCCGCGCGGTGGTGCCGGGTGGAAGCATCCTGCTGGCCGGGCTCCTCGAGACGCAGGA GGCGGCCGTGCGCGCCGCCTACCGCAAGGCCGGCCTCAGGCTGGCGGCACGGATGGTTCGCGGCGACTGGTCGATCCTGT GGCTGCGCCGCCGGAGCGCTGGCGGCGTGCGGTCGAGCCGAGTCGGGGCCTTGCCGGAGTGGTCCAAGCGGTGGTGA
Upstream 100 bases:
>100_bases TGTTCGAGCGGATGAGCGCAGAGCGCCGCCTCGACGAGCCCGGCGCCTGCAAGGCACTGGCCGCCGGAGCGCGCGACCGT CTTGAAAAGGCACTGGCACA
Downstream 100 bases:
>100_bases ACCGTTCAGGTTGCGCCCGATCGGCCTGAACAGGTTTACGGGGTTTACACAGTCCAGGAGAACTTTCGCGAGGCCCGCGA CCCACGCCTTTGCGATGCGA
Product: 50S ribosomal protein L11P methyltransferase
Products: NA
Alternate protein names: L11 Mtase [H]
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MSWKVTVFAPRDEVQAALVAHEDAWDWDHDIVIAGSEIAEDKPEDWQLEAWLDRKPTKADRNAIADLFEGAPPKLNVEKL PDADWVTLSQQGVEPIREGAFHVHTPEYPPLAQAGVRDFVIPASQAFGTGQHATTAGCLAMLTHMKRQGILVRNLADIGT GTGLLAFAGLHLWPSARAIASDIDAVCGPVVAENAANNGIALGDGPGRMAMVIAAGMEHPLLQAAGPYDLLIANILAGPL VELAPEFARAVVPGGSILLAGLLETQEAAVRAAYRKAGLRLAARMVRGDWSILWLRRRSAGGVRSSRVGALPEWSKRW
Sequences:
>Translated_318_residues MSWKVTVFAPRDEVQAALVAHEDAWDWDHDIVIAGSEIAEDKPEDWQLEAWLDRKPTKADRNAIADLFEGAPPKLNVEKL PDADWVTLSQQGVEPIREGAFHVHTPEYPPLAQAGVRDFVIPASQAFGTGQHATTAGCLAMLTHMKRQGILVRNLADIGT GTGLLAFAGLHLWPSARAIASDIDAVCGPVVAENAANNGIALGDGPGRMAMVIAAGMEHPLLQAAGPYDLLIANILAGPL VELAPEFARAVVPGGSILLAGLLETQEAAVRAAYRKAGLRLAARMVRGDWSILWLRRRSAGGVRSSRVGALPEWSKRW >Mature_317_residues SWKVTVFAPRDEVQAALVAHEDAWDWDHDIVIAGSEIAEDKPEDWQLEAWLDRKPTKADRNAIADLFEGAPPKLNVEKLP DADWVTLSQQGVEPIREGAFHVHTPEYPPLAQAGVRDFVIPASQAFGTGQHATTAGCLAMLTHMKRQGILVRNLADIGTG TGLLAFAGLHLWPSARAIASDIDAVCGPVVAENAANNGIALGDGPGRMAMVIAAGMEHPLLQAAGPYDLLIANILAGPLV ELAPEFARAVVPGGSILLAGLLETQEAAVRAAYRKAGLRLAARMVRGDWSILWLRRRSAGGVRSSRVGALPEWSKRW
Specific function: Methylates ribosomal protein L11 [H]
COG id: COG2264
COG function: function code J; Ribosomal protein L11 methylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. PrmA family [H]
Homologues:
Organism=Escherichia coli, GI2367208, Length=222, Percent_Identity=31.981981981982, Blast_Score=65, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010456 - InterPro: IPR004498 [H]
Pfam domain/function: PF06325 PrmA [H]
EC number: 2.1.1.- [C]
Molecular weight: Translated: 34107; Mature: 33976
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWKVTVFAPRDEVQAALVAHEDAWDWDHDIVIAGSEIAEDKPEDWQLEAWLDRKPTKAD CCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCHHCCCCCCCCEEEEECCCCCCHHH RNAIADLFEGAPPKLNVEKLPDADWVTLSQQGVEPIREGAFHVHTPEYPPLAQAGVRDFV HHHHHHHHCCCCCCCCHHHCCCCCEEEECHHCCHHHHCCCEEEECCCCCCHHHHCCHHEE IPASQAFGTGQHATTAGCLAMLTHMKRQGILVRNLADIGTGTGLLAFAGLHLWPSARAIA CCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH SDIDAVCGPVVAENAANNGIALGDGPGRMAMVIAAGMEHPLLQAAGPYDLLIANILAGPL HHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHH VELAPEFARAVVPGGSILLAGLLETQEAAVRAAYRKAGLRLAARMVRGDWSILWLRRRSA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC GGVRSSRVGALPEWSKRW CCCCCCCCCCCCCHHCCC >Mature Secondary Structure SWKVTVFAPRDEVQAALVAHEDAWDWDHDIVIAGSEIAEDKPEDWQLEAWLDRKPTKAD CEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCHHCCCCCCCCEEEEECCCCCCHHH RNAIADLFEGAPPKLNVEKLPDADWVTLSQQGVEPIREGAFHVHTPEYPPLAQAGVRDFV HHHHHHHHCCCCCCCCHHHCCCCCEEEECHHCCHHHHCCCEEEECCCCCCHHHHCCHHEE IPASQAFGTGQHATTAGCLAMLTHMKRQGILVRNLADIGTGTGLLAFAGLHLWPSARAIA CCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH SDIDAVCGPVVAENAANNGIALGDGPGRMAMVIAAGMEHPLLQAAGPYDLLIANILAGPL HHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHH VELAPEFARAVVPGGSILLAGLLETQEAAVRAAYRKAGLRLAARMVRGDWSILWLRRRSA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC GGVRSSRVGALPEWSKRW CCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: Catalyzes the methylation of ribosomal protein L11 by S-adenosyl methionine [C]
General reaction: Transferases; Transferring one-carbon groups; Methyltransferases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194 [H]