Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87199166
Identifier: 87199166
GI number: 87199166
Start: 1192227
End: 1192958
Strand: Direct
Name: 87199166
Synonym: Saro_1144
Alternate gene names: NA
Gene position: 1192227-1192958 (Clockwise)
Preceding gene: 87199165
Following gene: 161760696
Centisome position: 33.47
GC content: 66.12
Gene sequence:
>732_bases ATGTCTCGCTTCGGGCGCATCCTAGCGCCGACTTTCCTGCTCTCCGCGCTGGCCATCGGCCTTGCTTCGTGCGCCGCGCC GCCGCCGCCGCCCCCGCCGCCGCCTCCACCGCCTCCCAAGGTCGTGATCATCCCGCCGCGGCCCAAGGCCCCCAACGGTG CGTCCGAGAACATCTATGTCCCGCCGGCCGATGCCAACGGCCTGCGTCAGTCGCTCAACCGCAACATCTCGACCGCGCAG ATGGTGTGGAACCTGCGCGCGGCGTACAATGTCGCAGCGCTCAACTGCTCGGCGCCGCAGCACGCGGGCATCCTGCCGCT CTACAAGGGCTTCCTTACCACCCACGCCAAGGCTCTGAACGCGATCAACAAGCGCCTCGATGCGGAGTTCAAGGAAAAGT ACGGCGCAAAGTTCATCGCCCCGCGCGAAACCTACATCACCGCCGTCTACAACCACTTCGCCCTGCCGCCGACCCTGACC GATTTCTGTGATGCGGTCCTCGCCGTCGGCCGCGACGGTGCGGTGGTAAAGTCCGCAGAGCTTGAAGCCTTCGCCGTCCG CAGTTTGCCGAGCATCGAGGTGGTGTTCGACGATTTCTACCGGCGCTACGAAATCTACCGCAACGATCTCGCCATATGGG AGGCGCAGTACGGCAAGCCCGTCACCACCGCGCAGCCGGCGGCAGCCCTTCCGGGAACCGGCATTTCCGGCGCGAGCGGG GCTGCAAACTGA
Upstream 100 bases:
>100_bases TCTCAAAGGCATGATCGCGCGCTAGACTTGCCGTTCAGCTTGCAACAAGGATGCCGGGCGCAGGGTTTTCCGTGCCGCGG GGTCATCCGGGGGAATGCCA
Downstream 100 bases:
>100_bases GCGTCGGCAACCCCGCAAAAATGTGAATTTTGGTCTGGTAAGGTCGGGAACGCTGCGCTAATGGCGGCGCTCCCGGCAGG AATCACCTGACGGGCGATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MSRFGRILAPTFLLSALAIGLASCAAPPPPPPPPPPPPPKVVIIPPRPKAPNGASENIYVPPADANGLRQSLNRNISTAQ MVWNLRAAYNVAALNCSAPQHAGILPLYKGFLTTHAKALNAINKRLDAEFKEKYGAKFIAPRETYITAVYNHFALPPTLT DFCDAVLAVGRDGAVVKSAELEAFAVRSLPSIEVVFDDFYRRYEIYRNDLAIWEAQYGKPVTTAQPAAALPGTGISGASG AAN
Sequences:
>Translated_243_residues MSRFGRILAPTFLLSALAIGLASCAAPPPPPPPPPPPPPKVVIIPPRPKAPNGASENIYVPPADANGLRQSLNRNISTAQ MVWNLRAAYNVAALNCSAPQHAGILPLYKGFLTTHAKALNAINKRLDAEFKEKYGAKFIAPRETYITAVYNHFALPPTLT DFCDAVLAVGRDGAVVKSAELEAFAVRSLPSIEVVFDDFYRRYEIYRNDLAIWEAQYGKPVTTAQPAAALPGTGISGASG AAN >Mature_242_residues SRFGRILAPTFLLSALAIGLASCAAPPPPPPPPPPPPPKVVIIPPRPKAPNGASENIYVPPADANGLRQSLNRNISTAQM VWNLRAAYNVAALNCSAPQHAGILPLYKGFLTTHAKALNAINKRLDAEFKEKYGAKFIAPRETYITAVYNHFALPPTLTD FCDAVLAVGRDGAVVKSAELEAFAVRSLPSIEVVFDDFYRRYEIYRNDLAIWEAQYGKPVTTAQPAAALPGTGISGASGA AN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25960; Mature: 25829
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFGRILAPTFLLSALAIGLASCAAPPPPPPPPPPPPPKVVIIPPRPKAPNGASENIYV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEE PPADANGLRQSLNRNISTAQMVWNLRAAYNVAALNCSAPQHAGILPLYKGFLTTHAKALN CCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH AINKRLDAEFKEKYGAKFIAPRETYITAVYNHFALPPTLTDFCDAVLAVGRDGAVVKSAE HHHHHHCHHHHHHHCCEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECCC LEAFAVRSLPSIEVVFDDFYRRYEIYRNDLAIWEAQYGKPVTTAQPAAALPGTGISGASG HHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCC AAN CCC >Mature Secondary Structure SRFGRILAPTFLLSALAIGLASCAAPPPPPPPPPPPPPKVVIIPPRPKAPNGASENIYV CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEE PPADANGLRQSLNRNISTAQMVWNLRAAYNVAALNCSAPQHAGILPLYKGFLTTHAKALN CCCCCHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH AINKRLDAEFKEKYGAKFIAPRETYITAVYNHFALPPTLTDFCDAVLAVGRDGAVVKSAE HHHHHHCHHHHHHHCCEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECCC LEAFAVRSLPSIEVVFDDFYRRYEIYRNDLAIWEAQYGKPVTTAQPAAALPGTGISGASG HHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCC AAN CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA