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The map label for this gene is yciR [C]

Identifier: 87199128

GI number: 87199128

Start: 1152536

End: 1154830

Strand: Direct

Name: yciR [C]

Synonym: Saro_1106

Alternate gene names: 87199128

Gene position: 1152536-1154830 (Clockwise)

Preceding gene: 87199125

Following gene: 87199134

Centisome position: 32.36

GC content: 65.1

Gene sequence:

>2295_bases
ATGGGGACGGGACCCTTCATTCGGCAACGCCGGTCGCGGCAGACAGCCGGCGCGGCGAGCGCGGGGTGGATCGTGGCAGC
CACGTTCGTCGCCCTGCTGGCGCTTACGACCGCCCTGATCGTGGCGTTCCGAAATTCGACCAACATCGCTGACCACTTCG
CCCGCACCGAAGAACAGCGGCTGGTCGAACGCTTCATGGAGCGCACCGAGAAACAGATCCTCGAAGCGGACAAGCTGCAG
GTCGTGTGGGACGATGCCGTCACCATGCTGAACAGCCCCAAGGCCGAGGTGTGGGCGCGCAACTTCCTGGCAGGTTACTT
CTGGGGAAGTCACCGCATCGACCGCATATTTCACGTCAGGTTCGACGGCAGCCTCGTACGCTGCTGGCACGGCGTGAAAC
TCTCGCAGGACTGCCGCTACCGGCCCCTTTCCAGGACGATTTCGGGCCTGATTCGCCAGTCCCTGAAAGACCAGACCCAG
CGCGGGCAGGTGCGCGATTGGCGAAAGCACGGCAGCGTGAACTGGCCCTACGATTCCAAGGGCTTGCCCATCGGACTCGG
CCAGTCGTCGATTGCCAGCGTCGAAGGCCAGCCGGCCATCGTCGCGGTGGCTTCCGTCGTGCCCGACGTCACGCCTTCAT
TGCTCCAGGCAGAGCCCGACTACATCGTCCTCGTGCGCTTCATCGACGAGCGCATCATATCGGACCTGCATGAATCCCTG
GTGCTCGATGACGTGCGCTTCGAGACTTCGGCGACCGACGACAAGAATCGCAATTCCCTGGCGATCAGGGACCTGCACGG
AGACCGGATCGGCTGGATATCGTGGCTGTCAAAGCCGCCGGGACCGGCCATCCTGCGGCAGACGGCGCCGCTGCTGGCGG
TCTACATCCTGTTCTTCGTCGGCGTCGTGGCGGGCGGGGCGATCATCGTGCGCCGGATGCGCCGGACGACAAGCGAACTG
ATCGCCAGCGAAGCGCAGGCGCAGCACAATGCCCTGCACGATGCCATGTCGGGCCTGCCGAACCGCGCCCACTTCATGCA
ACGCCTGCGGCAGGAACTGAACGCCTGCGTCGAACGACGCGAACTGGGCGACGTCTTCGTCGCCTATGTCGACATCGACC
GGTTCAAGATCGTCAACGATACGCTGGGGCACCATGTAGGCGACGAACTGGTGCGGCAGGTGGCGCTTCGCCTGCGTCGC
TCGCTCCCGCCAGGCGACTTCCTGTCGCGCTTCGGCGGCGACGAATTCGTGCTCATGCGCCGCACCACGGGTGGCCGCGC
GGCGGCCGACATGCTTGGCAAGCAGATCATGGCATTGACCCGCGAGCCGTTCGTCATTTCCAGCAACAACCTGGAAGTGA
GCCTTTCGTGCGGGATAAGCTGGGGCCCCGAACAGAGCGAGGACCCCGGCGAACTCCTCCGGCGGGCGGACATCGCTCTC
TATCGCGCGAAGCAACGGGGCCGCGCGCGCTATCGCCGCTTCACGCGCGACATGGATGCTTCGGTCAAGCTGCGCCGCGA
GATGGAAGTCGAACTGCGCCGCGCGATCGTCCGCGACGAACTGACGCTTGCCTACCAGCCCATCGTCCATGCCGGGAGTG
GCGCCATCGAGGGTTTCGAGGCACTGCTGCGCTGGCCCCACCCCGAGCGCGGCTCGATCAGGCCCGGCCTGTTCGTGCCT
GTCGCCGAACAGGCGGGCATGATGGTACCGCTCGGGTCATGGGTGCTGCGACGCGTGTTCACCGAAAGCCGGCAATGGCC
GGATTGCGACATTTCGGTGAATCTTTCGCCCCTGCAGATCATGTCGAGCGACTTCCTCCAGGCGATGGACGAACTGGTGC
GCGAGACCGGGGCCGACCCGCGGCGTTTCATCCTCGAGGTCACCGAAGGGGTCATGCTCGACCGCAGCGACCATGTGCTC
GACGTGCTGAAGGGGCTCAACTACCGGGGCTTCCGCATCGCGCTCGACGATTTCGGCATCGGCTATTCCTCGCTCAGCTA
CCTGCGCTCGTTCCAGTTTGACCGGATCAAGATCGACAGGTCGTTCGTCCAGAACATCGAGGGCGATCTCGACGCCCATT
CGATCCTGAAGGCCATCGTCTCGCTCGGGCATACCTTGCGCATGAAGGTCGTGGCGGAAGGGGTGGAGACGCCGATGCAG
CGCGCGCTGGTCCAGGCAGCCGGCTGCCAGATGATCCAGGGACACCTGTTCTGGGAGGCGCTTCCGGTCGACGAGGCGAA
GGCGCTGGTCCGGCCCGCGAAAGTCCGCGGCCTGAGCAAGGTCCGCGTCGGCTGA

Upstream 100 bases:

>100_bases
GCGGCGACGGTGGATGAACGAAAGTTTGCCTGACGAAGAATTCGCCGCGCGTAACGGCTGCTAACCATTTCTTCGTAACC
GGTTGCTAGCTCTCGACTGC

Downstream 100 bases:

>100_bases
ACGCCGCCGCTGCCGTTCTTCAATAGGTTGGAAATCAGCCCTTGGCGGGCTTTGCCGTGTCGGCCTGCGCCGTCATCGTA
CGCGGATAGATGAAGCCCTT

Product: periplasmic sensor diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 763

Protein sequence:

>764_residues
MGTGPFIRQRRSRQTAGAASAGWIVAATFVALLALTTALIVAFRNSTNIADHFARTEEQRLVERFMERTEKQILEADKLQ
VVWDDAVTMLNSPKAEVWARNFLAGYFWGSHRIDRIFHVRFDGSLVRCWHGVKLSQDCRYRPLSRTISGLIRQSLKDQTQ
RGQVRDWRKHGSVNWPYDSKGLPIGLGQSSIASVEGQPAIVAVASVVPDVTPSLLQAEPDYIVLVRFIDERIISDLHESL
VLDDVRFETSATDDKNRNSLAIRDLHGDRIGWISWLSKPPGPAILRQTAPLLAVYILFFVGVVAGGAIIVRRMRRTTSEL
IASEAQAQHNALHDAMSGLPNRAHFMQRLRQELNACVERRELGDVFVAYVDIDRFKIVNDTLGHHVGDELVRQVALRLRR
SLPPGDFLSRFGGDEFVLMRRTTGGRAAADMLGKQIMALTREPFVISSNNLEVSLSCGISWGPEQSEDPGELLRRADIAL
YRAKQRGRARYRRFTRDMDASVKLRREMEVELRRAIVRDELTLAYQPIVHAGSGAIEGFEALLRWPHPERGSIRPGLFVP
VAEQAGMMVPLGSWVLRRVFTESRQWPDCDISVNLSPLQIMSSDFLQAMDELVRETGADPRRFILEVTEGVMLDRSDHVL
DVLKGLNYRGFRIALDDFGIGYSSLSYLRSFQFDRIKIDRSFVQNIEGDLDAHSILKAIVSLGHTLRMKVVAEGVETPMQ
RALVQAAGCQMIQGHLFWEALPVDEAKALVRPAKVRGLSKVRVG

Sequences:

>Translated_764_residues
MGTGPFIRQRRSRQTAGAASAGWIVAATFVALLALTTALIVAFRNSTNIADHFARTEEQRLVERFMERTEKQILEADKLQ
VVWDDAVTMLNSPKAEVWARNFLAGYFWGSHRIDRIFHVRFDGSLVRCWHGVKLSQDCRYRPLSRTISGLIRQSLKDQTQ
RGQVRDWRKHGSVNWPYDSKGLPIGLGQSSIASVEGQPAIVAVASVVPDVTPSLLQAEPDYIVLVRFIDERIISDLHESL
VLDDVRFETSATDDKNRNSLAIRDLHGDRIGWISWLSKPPGPAILRQTAPLLAVYILFFVGVVAGGAIIVRRMRRTTSEL
IASEAQAQHNALHDAMSGLPNRAHFMQRLRQELNACVERRELGDVFVAYVDIDRFKIVNDTLGHHVGDELVRQVALRLRR
SLPPGDFLSRFGGDEFVLMRRTTGGRAAADMLGKQIMALTREPFVISSNNLEVSLSCGISWGPEQSEDPGELLRRADIAL
YRAKQRGRARYRRFTRDMDASVKLRREMEVELRRAIVRDELTLAYQPIVHAGSGAIEGFEALLRWPHPERGSIRPGLFVP
VAEQAGMMVPLGSWVLRRVFTESRQWPDCDISVNLSPLQIMSSDFLQAMDELVRETGADPRRFILEVTEGVMLDRSDHVL
DVLKGLNYRGFRIALDDFGIGYSSLSYLRSFQFDRIKIDRSFVQNIEGDLDAHSILKAIVSLGHTLRMKVVAEGVETPMQ
RALVQAAGCQMIQGHLFWEALPVDEAKALVRPAKVRGLSKVRVG
>Mature_763_residues
GTGPFIRQRRSRQTAGAASAGWIVAATFVALLALTTALIVAFRNSTNIADHFARTEEQRLVERFMERTEKQILEADKLQV
VWDDAVTMLNSPKAEVWARNFLAGYFWGSHRIDRIFHVRFDGSLVRCWHGVKLSQDCRYRPLSRTISGLIRQSLKDQTQR
GQVRDWRKHGSVNWPYDSKGLPIGLGQSSIASVEGQPAIVAVASVVPDVTPSLLQAEPDYIVLVRFIDERIISDLHESLV
LDDVRFETSATDDKNRNSLAIRDLHGDRIGWISWLSKPPGPAILRQTAPLLAVYILFFVGVVAGGAIIVRRMRRTTSELI
ASEAQAQHNALHDAMSGLPNRAHFMQRLRQELNACVERRELGDVFVAYVDIDRFKIVNDTLGHHVGDELVRQVALRLRRS
LPPGDFLSRFGGDEFVLMRRTTGGRAAADMLGKQIMALTREPFVISSNNLEVSLSCGISWGPEQSEDPGELLRRADIALY
RAKQRGRARYRRFTRDMDASVKLRREMEVELRRAIVRDELTLAYQPIVHAGSGAIEGFEALLRWPHPERGSIRPGLFVPV
AEQAGMMVPLGSWVLRRVFTESRQWPDCDISVNLSPLQIMSSDFLQAMDELVRETGADPRRFILEVTEGVMLDRSDHVLD
VLKGLNYRGFRIALDDFGIGYSSLSYLRSFQFDRIKIDRSFVQNIEGDLDAHSILKAIVSLGHTLRMKVVAEGVETPMQR
ALVQAAGCQMIQGHLFWEALPVDEAKALVRPAKVRGLSKVRVG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=35.3510895883777, Blast_Score=255, Evalue=7e-69,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=30.9352517985612, Blast_Score=207, Evalue=3e-54,
Organism=Escherichia coli, GI226510982, Length=434, Percent_Identity=30.4147465437788, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=34.3220338983051, Blast_Score=149, Evalue=9e-37,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=36.2204724409449, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=35.7142857142857, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1787055, Length=251, Percent_Identity=33.4661354581673, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=32.618025751073, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=32, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788381, Length=436, Percent_Identity=26.1467889908257, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082096, Length=230, Percent_Identity=31.7391304347826, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1788849, Length=267, Percent_Identity=29.2134831460674, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=206, Percent_Identity=33.9805825242718, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=30.4932735426009, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=33.5227272727273, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=34.7058823529412, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=28.6486486486486, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=29.1139240506329, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=195, Percent_Identity=27.6923076923077, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081974, Length=254, Percent_Identity=24.4094488188976, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 85950; Mature: 85819

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTGPFIRQRRSRQTAGAASAGWIVAATFVALLALTTALIVAFRNSTNIADHFARTEEQR
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LVERFMERTEKQILEADKLQVVWDDAVTMLNSPKAEVWARNFLAGYFWGSHRIDRIFHVR
HHHHHHHHHHHHHHHHHCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
FDGSLVRCWHGVKLSQDCRYRPLSRTISGLIRQSLKDQTQRGQVRDWRKHGSVNWPYDSK
ECCCCEEHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCC
GLPIGLGQSSIASVEGQPAIVAVASVVPDVTPSLLQAEPDYIVLVRFIDERIISDLHESL
CCEEECCCHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCCCEEHHHHHHHHHHHHHHHHH
VLDDVRFETSATDDKNRNSLAIRDLHGDRIGWISWLSKPPGPAILRQTAPLLAVYILFFV
HHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GVVAGGAIIVRRMRRTTSELIASEAQAQHNALHDAMSGLPNRAHFMQRLRQELNACVERR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ELGDVFVAYVDIDRFKIVNDTLGHHVGDELVRQVALRLRRSLPPGDFLSRFGGDEFVLMR
HHCCEEEEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEE
RTTGGRAAADMLGKQIMALTREPFVISSNNLEVSLSCGISWGPEQSEDPGELLRRADIAL
ECCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
YRAKQRGRARYRRFTRDMDASVKLRREMEVELRRAIVRDELTLAYQPIVHAGSGAIEGFE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ALLRWPHPERGSIRPGLFVPVAEQAGMMVPLGSWVLRRVFTESRQWPDCDISVNLSPLQI
HHHCCCCCCCCCCCCCCEEEEHHHCCCEEEHHHHHHHHHHHHCCCCCCCCEEECCCHHHH
MSSDFLQAMDELVRETGADPRRFILEVTEGVMLDRSDHVLDVLKGLNYRGFRIALDDFGI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHCCCCHHHHHHHHCCCCCCEEEEEECCCC
GYSSLSYLRSFQFDRIKIDRSFVQNIEGDLDAHSILKAIVSLGHTLRMKVVAEGVETPMQ
CHHHHHHHHHCCCHHEEECHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RALVQAAGCQMIQGHLFWEALPVDEAKALVRPAKVRGLSKVRVG
HHHHHHHCHHHHHHHHHHEECCCHHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure 
GTGPFIRQRRSRQTAGAASAGWIVAATFVALLALTTALIVAFRNSTNIADHFARTEEQR
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LVERFMERTEKQILEADKLQVVWDDAVTMLNSPKAEVWARNFLAGYFWGSHRIDRIFHVR
HHHHHHHHHHHHHHHHHCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
FDGSLVRCWHGVKLSQDCRYRPLSRTISGLIRQSLKDQTQRGQVRDWRKHGSVNWPYDSK
ECCCCEEHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCC
GLPIGLGQSSIASVEGQPAIVAVASVVPDVTPSLLQAEPDYIVLVRFIDERIISDLHESL
CCEEECCCHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCCCEEHHHHHHHHHHHHHHHHH
VLDDVRFETSATDDKNRNSLAIRDLHGDRIGWISWLSKPPGPAILRQTAPLLAVYILFFV
HHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GVVAGGAIIVRRMRRTTSELIASEAQAQHNALHDAMSGLPNRAHFMQRLRQELNACVERR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ELGDVFVAYVDIDRFKIVNDTLGHHVGDELVRQVALRLRRSLPPGDFLSRFGGDEFVLMR
HHCCEEEEEEECCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEE
RTTGGRAAADMLGKQIMALTREPFVISSNNLEVSLSCGISWGPEQSEDPGELLRRADIAL
ECCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
YRAKQRGRARYRRFTRDMDASVKLRREMEVELRRAIVRDELTLAYQPIVHAGSGAIEGFE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ALLRWPHPERGSIRPGLFVPVAEQAGMMVPLGSWVLRRVFTESRQWPDCDISVNLSPLQI
HHHCCCCCCCCCCCCCCEEEEHHHCCCEEEHHHHHHHHHHHHCCCCCCCCEEECCCHHHH
MSSDFLQAMDELVRETGADPRRFILEVTEGVMLDRSDHVLDVLKGLNYRGFRIALDDFGI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHCCCCHHHHHHHHCCCCCCEEEEEECCCC
GYSSLSYLRSFQFDRIKIDRSFVQNIEGDLDAHSILKAIVSLGHTLRMKVVAEGVETPMQ
CHHHHHHHHHCCCHHEEECHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RALVQAAGCQMIQGHLFWEALPVDEAKALVRPAKVRGLSKVRVG
HHHHHHHCHHHHHHHHHHEECCCHHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]