Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is nagZ [H]
Identifier: 87199113
GI number: 87199113
Start: 1134430
End: 1135497
Strand: Direct
Name: nagZ [H]
Synonym: Saro_1091
Alternate gene names: 87199113
Gene position: 1134430-1135497 (Clockwise)
Preceding gene: 87199112
Following gene: 87199114
Centisome position: 31.85
GC content: 67.7
Gene sequence:
>1068_bases TTGGGCGCTCCGGGCCTTGCAAATGGCCATGGCATCCGCGAATCCACCACCATGCTTCCGGCGATCTTCGGGCTTTCGGG CCTGACCCTGACTGAAGACGAACGCGCCTTCTTCCGCGATGCGGACCCGGCGGGATATATCCTGTTCGGTCGGAATGTGG AAAGCCCGGCGCAGCTTCGCGCCCTGACGGACGAGCTGCGCGCGCTGCATGGCCGTGACCGCACTTTCATCTGCATCGAT CAGGAAGGCGGGCGCGTCGCGCGGATGAAGCCGCCGGTCTGGCAACCCTATCCTCCCGGCGAGCGGTTCGACCGGCTCTA CGACATCGCCCCTGCCAGCGCGATCGAGGCTGCGCGCGCCAATGCCGAAGCGCTGGGCCTCGATCTGGCGGAAGCGGGGA TCAGCGTCGATTGCCTGCCGCTGCTCGACGTCCGCCAGCCGGGCGCGCACGACGTCATCGGGGACCGTGCGCTCGGTTCG GAACCGATGCGCGTTGCGGCGCTCGGAAGGGCAACGCTCGATGGGCTGGCGCGCGCGGGAATTGCGGGCGTGGTCAAGCA CATGCCGGGCCATGGCCGCGCGCTGGTCGATAGCCACAAGGAACTGCCCACGGTCTCTGCCAGCGCCGAGGAGCTGGAAA TGGACCTCGCTCCGTTCCGCGCCCTGCGCGATGCCACCATCGGCATGACCGCGCACCTGCGGTTCCTCGCATGGGATGAC TGGAACCCGGCGACGCACTCGCCCTTCGTCATCGAGGAGATCATCCGCAAGGCGATCGGCTTCGACGGGCTGCTCCTGAC CGACGATCTCGATATGCAGGCGCTTGGCGGCACCGTGCCCGAACGCGCGGCGCGCGCGCAGGCTGCGGGCTGCGACATCG CCTTGAATTGCTGGGCGAAGATGGATGACATGGTCGGCATCGCGAACAGCCTCGCGCCCATGTCTGACAAAGTGATGCAG CGGCTGGAACGCGCGCTCGCGCCCACCGCGGCCTTCGACGCTCCAGCCGACATGACCGCTCAGGCCGCGCTTTTCGACAA GCGCGACCGGTTGCTGGAACTGGCCTGA
Upstream 100 bases:
>100_bases GCTGAACAGGGGCTGTTCCGCTCCCGGTTGAAAGCGGGGCAGGCCAGGTTCACGATCATCCGCGGCCTGCGCGCGGCGGC GCGACTGCTTTTCCCCGGTC
Downstream 100 bases:
>100_bases TGGACGAAGTCGCCGCACCGACGCTGTTCGAAGGCGACGAGGTGTGGGACGGCGTCGCCTCTGCCCAGGGCAACGACGCG GCGCTCTATCTCGAGCTGGA
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MGAPGLANGHGIRESTTMLPAIFGLSGLTLTEDERAFFRDADPAGYILFGRNVESPAQLRALTDELRALHGRDRTFICID QEGGRVARMKPPVWQPYPPGERFDRLYDIAPASAIEAARANAEALGLDLAEAGISVDCLPLLDVRQPGAHDVIGDRALGS EPMRVAALGRATLDGLARAGIAGVVKHMPGHGRALVDSHKELPTVSASAEELEMDLAPFRALRDATIGMTAHLRFLAWDD WNPATHSPFVIEEIIRKAIGFDGLLLTDDLDMQALGGTVPERAARAQAAGCDIALNCWAKMDDMVGIANSLAPMSDKVMQ RLERALAPTAAFDAPADMTAQAALFDKRDRLLELA
Sequences:
>Translated_355_residues MGAPGLANGHGIRESTTMLPAIFGLSGLTLTEDERAFFRDADPAGYILFGRNVESPAQLRALTDELRALHGRDRTFICID QEGGRVARMKPPVWQPYPPGERFDRLYDIAPASAIEAARANAEALGLDLAEAGISVDCLPLLDVRQPGAHDVIGDRALGS EPMRVAALGRATLDGLARAGIAGVVKHMPGHGRALVDSHKELPTVSASAEELEMDLAPFRALRDATIGMTAHLRFLAWDD WNPATHSPFVIEEIIRKAIGFDGLLLTDDLDMQALGGTVPERAARAQAAGCDIALNCWAKMDDMVGIANSLAPMSDKVMQ RLERALAPTAAFDAPADMTAQAALFDKRDRLLELA >Mature_354_residues GAPGLANGHGIRESTTMLPAIFGLSGLTLTEDERAFFRDADPAGYILFGRNVESPAQLRALTDELRALHGRDRTFICIDQ EGGRVARMKPPVWQPYPPGERFDRLYDIAPASAIEAARANAEALGLDLAEAGISVDCLPLLDVRQPGAHDVIGDRALGSE PMRVAALGRATLDGLARAGIAGVVKHMPGHGRALVDSHKELPTVSASAEELEMDLAPFRALRDATIGMTAHLRFLAWDDW NPATHSPFVIEEIIRKAIGFDGLLLTDDLDMQALGGTVPERAARAQAAGCDIALNCWAKMDDMVGIANSLAPMSDKVMQR LERALAPTAAFDAPADMTAQAALFDKRDRLLELA
Specific function: Cleaves GlcNAc linked beta-1,4 to MurNAc tripeptides [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family. NagZ subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=318, Percent_Identity=33.3333333333333, Blast_Score=142, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022956 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3 [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 38103; Mature: 37972
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAPGLANGHGIRESTTMLPAIFGLSGLTLTEDERAFFRDADPAGYILFGRNVESPAQLR CCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHHCCCCCCEEEEECCCCCCHHHHH ALTDELRALHGRDRTFICIDQEGGRVARMKPPVWQPYPPGERFDRLYDIAPASAIEAARA HHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHC NAEALGLDLAEAGISVDCLPLLDVRQPGAHDVIGDRALGSEPMRVAALGRATLDGLARAG CHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH IAGVVKHMPGHGRALVDSHKELPTVSASAEELEMDLAPFRALRDATIGMTAHLRFLAWDD HHHHHHHCCCCCCHHHHCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC WNPATHSPFVIEEIIRKAIGFDGLLLTDDLDMQALGGTVPERAARAQAAGCDIALNCWAK CCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCHHHHHHHHHCCCCEEEHHHHH MDDMVGIANSLAPMSDKVMQRLERALAPTAAFDAPADMTAQAALFDKRDRLLELA HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure GAPGLANGHGIRESTTMLPAIFGLSGLTLTEDERAFFRDADPAGYILFGRNVESPAQLR CCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCHHHHCCCCCCEEEEECCCCCCHHHHH ALTDELRALHGRDRTFICIDQEGGRVARMKPPVWQPYPPGERFDRLYDIAPASAIEAARA HHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHC NAEALGLDLAEAGISVDCLPLLDVRQPGAHDVIGDRALGSEPMRVAALGRATLDGLARAG CHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH IAGVVKHMPGHGRALVDSHKELPTVSASAEELEMDLAPFRALRDATIGMTAHLRFLAWDD HHHHHHHCCCCCCHHHHCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC WNPATHSPFVIEEIIRKAIGFDGLLLTDDLDMQALGGTVPERAARAQAAGCDIALNCWAK CCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCHHHHHHHHHCCCCEEEHHHHH MDDMVGIANSLAPMSDKVMQRLERALAPTAAFDAPADMTAQAALFDKRDRLLELA HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA